Browse Element(s) Details


Os.2769.1.S1_at

Description gb:AK066761.1
DB_XREF= gi:32976779
TID=Os.2769.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2769 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative DnaJ domain containg protein (OSJNBa0027L23.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074H19, full insert sequence.
FL= gb:AK066761.1 gb:AK068812.1 gb:AK100015.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4243910/11DNAJ heat shock N-terminal domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42420Os.4114.1.S1_at11/1110+22506996..22511053GTPase activating protein, putative, expressed
LOC_Os10g42430Os.46443.1.S1_at11/1110+22527589..22530117transcription factor MYC7E, putative, expressed
LOC_Os10g42439Os.2769.1.S2_at11/1110+22531704..22546265DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os10g42439Os.2769.1.S1_at10/1110+22531704..22546265DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os10g42448NANA10+22556602..22557262retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42460NANA10+22561550..22563687retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g42464OsAffx.10020.1.S1_x_at1/1110+22565818..22566645retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42464OsAffx.8338.1.S1_x_at1/1110+22565818..22566645retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42470NANA10+22566992..22570348retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42480Os.50255.1.S1_at3/1110+22570908..22574231retrotransposon protein, putative, unclassified
LOC_Os10g42480Os.9332.2.S1_x_at1/1110+22570908..22574231retrotransposon protein, putative, unclassified
LOC_Os10g42480Os.9332.2.S1_at1/1110+22570908..22574231retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0006897biological_processendocytosis
GO:0009660biological_processamyloplast organization and biogenesis
GO:0009959biological_processnegative gravitropism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2769.1.S1_at--12--7591Chr10:22534467..22534491 (25 bp)
GGGCTGCTAGATCAGTATGTCTCAT
LOC_Os10g42439
Os.2769.1.S1_at--1092--3011Chr10:22534416..22534440 (25 bp)
AATGCTGTTGATCCAGAGCTTCCGT
LOC_Os10g42439
Os.2769.1.S1_at--1091--3672Chr10:22534386..22534410 (25 bp)
CTTTCTGCTGCATTGGTTTCATTGT
LOC_Os10g42439
Os.2769.1.S1_at--580--7871Chr10:22534372..22534396 (25 bp)
GGTTTCATTGTTGCGTGTTCATCCA
LOC_Os10g42439
Os.2769.1.S1_at--334--3391Chr10:22534349..22534373 (25 bp)
CAGCCCTTGCAGACCATGTTGGTTA
LOC_Os10g42439
Os.2769.1.S1_at--745--1911Chr10:22534276..22534300 (25 bp)
ACGGGACACTATGGCATCCGGACAA
LOC_Os10g42439
Os.2769.1.S1_at--681--5451Chr10:22534179..22534203 (25 bp)
GAACGTGTCCGGCTTAGTTGTTTGC
LOC_Os10g42439
Os.2769.1.S1_at--276--1251Chr10:22534164..22534188 (25 bp)
AGTTGTTTGCGAGTGCTGCATCAGC
LOC_Os10g42439
Os.2769.1.S1_at--823--8291Chr10:22534138..22534162 (25 bp)
GGCTTCCAGCACTACTTGTGCAGAA
LOC_Os10g42439
Os.2769.1.S1_at--652--2551NONE
AACTCCTCAGGTTGTTCCATTGCTT
NONE
Os.2769.1.S1_at--1140--2671Chr10:22533517..22533541 (25 bp)
AAGCGTGTTGTTGGTGCTGGCAATC
LOC_Os10g42439
Target Sequence 
GGGCTGCTAGATCAGTATGTCTCATCAGTTGCTGCCACACACTATGAGGCGAATGCTGTTGATCCAGAGCTTCCGTTGCT
GCTTTCTGCTGCATTGGTTTCATTGTTGCGTGTTCATCCAGCCCTTGCAGACCATGTTGGTTACCTAGGTTATGTTCCAA
AGCTGGTTTCAGCTATGGCATATGAGGGTAGACGGGACACTATGGCATCCGGACAAACCACAAGTAGGTTGCAAGCGGAA
CCTAGCAATCAAGAGAACTCGGCGGACTCTACCGTGCAGACTCCACAAGAACGTGTCCGGCTTAGTTGTTTGCGAGTGCT
GCATCAGCTGGCTTCCAGCACTACTTGTGCAGAAGCTATGGCAGCCACAAGTGCAGGAACTCCTCAGGTTGTTCCATTGC
TTATGAAAGCAATTGGATGGCAAGGTGGAAGTATACTGGCACTAGAGACACTAAAGCGTGTTGTTGGTGCTGGCAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2769.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis