Browse Element(s) Details


Os.2769.1.S2_at

Description gb:AK100015.1
DB_XREF= gi:32985224
TID=Os.2769.1
CNT=18
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.2769 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative DnaJ domain containg protein (OSJNBa0027L23.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013142N08, full insert sequence.
FL= gb:AK066761.1 gb:AK068812.1 gb:AK100015.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4243911/11DNAJ heat shock N-terminal domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42420Os.4114.1.S1_at11/1110+22506996..22511053GTPase activating protein, putative, expressed
LOC_Os10g42430Os.46443.1.S1_at11/1110+22527589..22530117transcription factor MYC7E, putative, expressed
LOC_Os10g42439Os.2769.1.S2_at11/1110+22531704..22546265DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os10g42439Os.2769.1.S1_at10/1110+22531704..22546265DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os10g42448NANA10+22556602..22557262retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42460NANA10+22561550..22563687retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g42464OsAffx.10020.1.S1_x_at1/1110+22565818..22566645retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42464OsAffx.8338.1.S1_x_at1/1110+22565818..22566645retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42470NANA10+22566992..22570348retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42480Os.50255.1.S1_at3/1110+22570908..22574231retrotransposon protein, putative, unclassified
LOC_Os10g42480Os.9332.2.S1_x_at1/1110+22570908..22574231retrotransposon protein, putative, unclassified
LOC_Os10g42480Os.9332.2.S1_at1/1110+22570908..22574231retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0006897biological_processendocytosis
GO:0009660biological_processamyloplast organization and biogenesis
GO:0009959biological_processnegative gravitropism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2769.1.S2_at--905--3411Chr10:22532287..22532311 (25 bp)
CAGAAGCACGATTTATTCCTCCCAT
LOC_Os10g42439
Os.2769.1.S2_at--678--3011Chr10:22532260..22532284 (25 bp)
AATGCACAGTCTTCTGCTGCTGGAG
LOC_Os10g42439
Os.2769.1.S2_at--11--8911Chr10:22532222..22532246 (25 bp)
TGAGAGCTCATCGTCAAGACTGACC
LOC_Os10g42439
Os.2769.1.S2_at--897--8351Chr10:22532106..22532130 (25 bp)
GGCGGCATTCTTATCAGCATTCATA
LOC_Os10g42439
Os.2769.1.S2_at--546--5431Chr10:22532070..22532094 (25 bp)
GAACCACGTTAAGCTCAGATCATTA
LOC_Os10g42439
Os.2769.1.S2_at--914--10231Chr10:22532018..22532042 (25 bp)
TTTGGCTTGGTTGGCCTAGCAATTT
LOC_Os10g42439
Os.2769.1.S2_at--133--10031Chr10:22532002..22532026 (25 bp)
TAGCAATTTCGCACACAGGCCAGAG
LOC_Os10g42439
Os.2769.1.S2_at--76--9871Chr10:22531945..22531969 (25 bp)
TACAGTTTCACCCATACATTACTCG
LOC_Os10g42439
Os.2769.1.S2_at--390--311Chr10:22531882..22531906 (25 bp)
ATAGCCTGTACAGTTTTCCATTACA
LOC_Os10g42439
Os.2769.1.S2_at--30--6151Chr10:22531855..22531879 (25 bp)
GAGGTCGAGTTCATGCTAGTTTCTT
LOC_Os10g42439
Os.2769.1.S2_at--731--9851Chr10:22531795..22531819 (25 bp)
TACACTGTAACATACCTGTCCATAG
LOC_Os10g42439
Target Sequence 
CAGAAGCACGATTTATTCCTCCCATCCAATGCACAGTCTTCTGCTGCTGGAGTTGCAGGGCTCATTGAGAGCTCATCGTC
AAGACTGACCTACGCCCTTACTGCACCACCACCTCAGCCTGCCTTGGTCCGGCTACCTTCTACAGCTCCAGCGCTACCAT
CGGCTCCTGCAAATCCCAGTGGGCGGCATTCTTATCAGCATTCATAGCGTGCGAAATGAACCACGTTAAGCTCAGATCAT
TAGCGGTGTGATCATTTCAAGTTNTATTCTTTGGCTTGGTTGGCCTAGCAATTTCGCACACAGGCCAGAGCGCCACAAAG
GGGACTTGCTACAACAGCAAAATACAGTTTCACCCATACATTACTCGCAACTTGGGGCAGGAGGCCTGCGTTGNAGTGCC
AGTACATAGCCTGTACAGTTTTCCATTACATAGAGGTCGAGTTCATGCTAGTTTCTTGAGAATGTAAAGCATATTGTTGT
TTTGNTTTTTTTTTACACTGTAACATACCTGTCCATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2769.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis