Browse Element(s) Details


Os.27702.1.S1_x_at

Description gb:AK111519.1
DB_XREF= gi:37988182
TID=Os.27702.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27702 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013100B16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002H13, full insert sequence.
FL= gb:AK111519.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1005410/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g10000Os.53295.1.A1_at11/119+5444591..5449231cation exchanger, putative, expressed
LOC_Os09g10000OsAffx.17627.1.S1_s_at11/119+5444591..5449231cation exchanger, putative, expressed
LOC_Os09g10000OsAffx.17627.1.S1_at7/119+5444591..5449231cation exchanger, putative, expressed
LOC_Os09g10010NANA9+5453170..5453706expressed protein
LOC_Os09g10020Os.17937.3.S1_at1/119+5455318..5460131transposon protein, putative, unclassified
LOC_Os09g10030Os.46012.3.S1_x_at7/119+5462372..5468063retrotransposon protein, putative, unclassified
LOC_Os09g10030Os.46012.2.S1_x_at6/119+5462372..5468063retrotransposon protein, putative, unclassified
LOC_Os09g10030Os.27088.1.A1_x_at5/119+5462372..5468063retrotransposon protein, putative, unclassified
LOC_Os09g10030Os.54691.1.S1_x_at1/119+5462372..5468063retrotransposon protein, putative, unclassified
LOC_Os09g10054Os.27702.2.A1_at11/119+5470800..5490310NB-ARC domain containing protein, expressed
LOC_Os09g10054OsAffx.29785.1.S1_s_at11/119+5470800..5490310NB-ARC domain containing protein, expressed
LOC_Os09g10054Os.27702.1.S1_x_at10/119+5470800..5490310NB-ARC domain containing protein, expressed
LOC_Os09g10054OsAffx.25067.1.S1_at5/119+5470800..5490310NB-ARC domain containing protein, expressed
LOC_Os09g10054Os.52634.2.S1_x_at1/119+5470800..5490310NB-ARC domain containing protein, expressed
LOC_Os09g10080NANA9+5491541..5494479retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g10090Os.38764.1.S1_x_at8/119+5497077..5498041retrotransposon protein, putative, unclassified
LOC_Os09g10090Os.10731.1.A1_a_at3/119+5497077..5498041retrotransposon protein, putative, unclassified
LOC_Os09g10100Os.46012.2.S1_x_at6/119+5502778..5504667retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g10100Os.46012.3.S1_x_at5/119+5502778..5504667retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g10100Os.27088.1.A1_x_at5/119+5502778..5504667retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g10100Os.46012.3.S1_at2/119+5502778..5504667retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g10100Os.54691.1.S1_x_at1/119+5502778..5504667retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g10109NANA9+5506267..5507347retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g10120NANA9+5507543..5510745Zinc knuckle family protein
LOC_Os09g10130NANA9+5513058..5514138retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g10140NANA9+5514334..5517536Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006952biological_processdefense response
GO:0009598biological_processdetection of pathogenic bacteria
GO:0009626biological_processhypersensitive response
GO:0005886cellular_componentplasma membrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27702.1.S1_x_at--50--7391Chr09:5471518..5471542 (25 bp)
GTGAGATGGTCACGCTGATCAGCTC
LOC_Os09g10054
Os.27702.1.S1_x_at--1067--8831NONE
TGATCAGCTCGGACGGAGCCCGCTT
NONE
Os.27702.1.S1_x_at--76--5191Chr09:5471424..5471448 (25 bp)
GAAGGACGACTACAACGCCATCAAC
LOC_Os09g10054
Os.27702.1.S1_x_at--891--8991Chr09:5471263..5471287 (25 bp)
TGAAGAGCTTCGACGACGAGTTCAT
LOC_Os09g10054
Os.27702.1.S1_x_at--874--5771Chr09:5471249..5471273 (25 bp)
GACGAGTTCATCCTGGTGGACAACC
LOC_Os09g10054
Os.27702.1.S1_x_at--259--8531Chr09:5471233..5471257 (25 bp)
TGGACAACCACATGCTGTACAGCTT
LOC_Os09g10054
Os.27702.1.S1_x_at--217--8751Chr09:5471218..5471242 (25 bp)
TGTACAGCTTGCTCACGGCGGCGGA
LOC_Os09g10054
Os.27702.1.S1_x_at--120--8491Chr09:5471164..5471188 (25 bp)
TGGCATGCCAGCGATTGGCGGACAT
LOC_Os09g10054
Os.27702.1.S1_x_at--741--4371Chr09:5471092..5471116 (25 bp)
CCAACGACTTCACGCCGGAGGAAGA
LOC_Os09g10054
Os.27702.1.S1_x_at--87--8171Chr09:5471043..5471067 (25 bp)
GGAACAATGGCTCTGATCCTATTCT
LOC_Os09g10054
Os.27702.1.S1_x_at--119--8331Chr09:5471035..5471059 (25 bp)
GGCTCTGATCCTATTCTTACATGTA
LOC_Os09g10054
Target Sequence 
GTGAGATGGTCACGCTGATCAGCTCGGACGGAGCCCGCTTCGAGGTGCCGGAGGCGGCGGTGAGGCTGTCGCAGACGGTG
CTCGACGAGATGAAGAAGGACGACTACAACGCCATCAACGGCATCCCTCTCCCCAACGTCGCCGGCGACGTCCTCGCCAA
GGTGGTCGAGTACTGCACCAAGCACGCCTCCGCCGCCGCCGCCGCCATCAACGCCGACACGGCGAAGACGAGCAAGGAGG
AGGAGGAGCTGATGATGAAGAGCTTCGACGACGAGTTCATCCTGGTGGACAACCACATGCTGTACAGCTTGCTCACGGCG
GCGGACGCCATGCGCATCCAGGGGCTGATGGACCTGGCATGCCAGCGATTGGCGGACATGATCAAGGGCAAGACGTCGGA
GCAGATGAGGCAGACGTTGGGGATCACCAACGACTTCACGCCGGAGGAAGAAGAGGAGTTTCGCCGGGAGGACGAGGAAC
AATGGCTCTGATCCTATTCTTACATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27702.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis