Browse Element(s) Details


Os.53295.1.A1_at

Description gb:AK071858.1
DB_XREF= gi:32981881
TID=Os.53295.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53295 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023117G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023117G02, full insert sequence.
FL= gb:AK071858.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1000011/11cation exchanger, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09960NANA9+5419149..5423600retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g09970Os.46314.2.S1_x_at6/119+5425226..5427804retrotransposon protein, putative, unclassified
LOC_Os09g09970Os.47114.1.S1_x_at1/119+5425226..5427804retrotransposon protein, putative, unclassified
LOC_Os09g09970Os.10731.2.A1_at1/119+5425226..5427804retrotransposon protein, putative, unclassified
LOC_Os09g09980Os.16809.1.S1_at11/119+5429895..5432234Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os09g09990Os.14919.1.S1_at5/119+5434182..5441247transposon protein, putative, Mutator sub-class
LOC_Os09g09990Os.56216.1.S1_at2/119+5434182..5441247transposon protein, putative, Mutator sub-class
LOC_Os09g09990OsAffx.29313.1.S1_at1/119+5434182..5441247transposon protein, putative, Mutator sub-class
LOC_Os09g10000Os.53295.1.A1_at11/119+5444591..5449231cation exchanger, putative, expressed
LOC_Os09g10000OsAffx.17627.1.S1_s_at11/119+5444591..5449231cation exchanger, putative, expressed
LOC_Os09g10000OsAffx.17627.1.S1_at7/119+5444591..5449231cation exchanger, putative, expressed
LOC_Os09g10010NANA9+5453170..5453706expressed protein
LOC_Os09g10020Os.17937.3.S1_at1/119+5455318..5460131transposon protein, putative, unclassified
LOC_Os09g10030Os.46012.3.S1_x_at7/119+5462372..5468063retrotransposon protein, putative, unclassified
LOC_Os09g10030Os.46012.2.S1_x_at6/119+5462372..5468063retrotransposon protein, putative, unclassified
LOC_Os09g10030Os.27088.1.A1_x_at5/119+5462372..5468063retrotransposon protein, putative, unclassified
LOC_Os09g10030Os.54691.1.S1_x_at1/119+5462372..5468063retrotransposon protein, putative, unclassified
LOC_Os09g10054Os.27702.2.A1_at11/119+5470800..5490310NB-ARC domain containing protein, expressed
LOC_Os09g10054OsAffx.29785.1.S1_s_at11/119+5470800..5490310NB-ARC domain containing protein, expressed
LOC_Os09g10054Os.27702.1.S1_x_at10/119+5470800..5490310NB-ARC domain containing protein, expressed
LOC_Os09g10054OsAffx.25067.1.S1_at5/119+5470800..5490310NB-ARC domain containing protein, expressed
LOC_Os09g10054Os.52634.2.S1_x_at1/119+5470800..5490310NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0015491molecular_functioncation:cation antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53295.1.A1_at--711--1611Chr09:5445097..5445121 (25 bp)
AGCTGTGGAGGTGTCTTCGTTAACC
LOC_Os09g10000
Os.53295.1.A1_at--21--10611Chr09:5445047..5445071 (25 bp)
TTCTGCTTTTTGTAATGACCTGTAT
LOC_Os09g10000
Os.53295.1.A1_at--544--8931Chr09:5445032..5445056 (25 bp)
TGACCTGTATGTTCATCATGGTTGT
LOC_Os09g10000
Os.53295.1.A1_at--1100--9611Chr09:5445017..5445041 (25 bp)
TCATGGTTGTTCTACTTATACGGGT
LOC_Os09g10000
Os.53295.1.A1_at--760--2631Chr09:5444992..5445016 (25 bp)
AACCTAAGGCGTGGCATTCACTGAA
LOC_Os09g10000
Os.53295.1.A1_at--946--9911Chr09:5444942..5444966 (25 bp)
TACTGCTCGAAGATAGACCTCCATT
LOC_Os09g10000
Os.53295.1.A1_at--1073--7391Chr09:5444891..5444915 (25 bp)
GTGATAGATGCTGCGACTTTCTTTA
LOC_Os09g10000
Os.53295.1.A1_at--219--4611Chr09:5444879..5444903 (25 bp)
GCGACTTTCTTTAGTCAGCTAGCTA
LOC_Os09g10000
Os.53295.1.A1_at--1014--3571Chr09:5444696..5444720 (25 bp)
CATATTTTTGTAAGCCGCTGATATA
LOC_Os09g10000
Os.53295.1.A1_at--289--931Chr09:5444669..5444693 (25 bp)
AGGCAGACGCTGATATACTTCTTAA
LOC_Os09g10000
Os.53295.1.A1_at--4--2711Chr09:5444603..5444627 (25 bp)
AAGCATATGTGTTGCCTTCAAACGA
LOC_Os09g10000
Target Sequence 
AGCTGTGGAGGTGTCTTCGTTAACCTCCAAAACAACTTGTTTCCANTGGTTTCTGCTTTTTGTAATGACCTGTATGTTCA
TCATGGTTGTTCTACTTATACGGGTAACCTAAGGCGTGGCATTCACTGAAACAAATGTGACCAGTTACNNTACATTACTG
CTCGAAGATAGACCTCCATTACAAAATGCTGTACTGACTAGTATAAGTGATAGATGCTGCGACTTTCTTTAGTCAGCTAG
CTAGAAGCTGTTAATAAATGAATATAGCAGGNTTTTGGCCATGTATNACCATGCTNNNNNNNNNNNNGACCGAGTTTGAA
TNCATTACCTAAAAAAAAATGGATATAGCAGNCANCCGCTGATATGATTTTTTTNCCCTCATTTTTTTGNANGTGCAATG
AGTTGTTCGGNGNTCATATTTTTGTAAGCCGCTGATATAGNAGGCAGACGCTGATATACTTCTTAANTTCCATTTGATGT
ATNNNNANTNNANNNNNANNAAATTGCAAGCATATGTGTTGCCTTCAAACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53295.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis