Browse Element(s) Details


Os.27706.1.S1_at

Description gb:AK074001.1
DB_XREF= gi:32984024
TID=Os.27706.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.27706 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033074I09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033074I09, full insert sequence.
FL= gb:AK074001.1 gb:AK064378.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g429808/11La domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42950Os.25017.1.S1_at11/118+27009417..27012121haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os08g42960Os.49213.1.S1_at11/118+27023626..27027664Ankyrin-1, putative, expressed
LOC_Os08g42980Os.27706.1.S1_at8/118+27030760..27036184La domain containing protein, expressed
LOC_Os08g42990OsAffx.6118.1.S1_at11/118+27036436..27038464expressed protein
LOC_Os08g43000OsAffx.6119.1.S1_at11/118+27042788..27046420NB-ARC domain containing protein, expressed
LOC_Os08g43010OsAffx.17486.1.S1_at11/118+27048850..27052404NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27706.1.S1_at--613--9231Chr08:27035789..27035813 (25 bp)
TCCATCGAATCACAGTGCTCTTGCT
LOC_Os08g42980
Os.27706.1.S1_at--166--9591Chr08:27035807..27035831 (25 bp)
TCTTGCTGATCATCCTTCAAAGCCA
LOC_Os08g42980
Os.27706.1.S1_at--129--8611Chr08:27035837..27035861 (25 bp)
TGGTCCTCGTATGCCAGATGGCACA
LOC_Os08g42980
Os.27706.1.S1_at--506--8151Chr08:27035883..27035907 (25 bp)
GGAAAGCCACTCAATCCTACCAATG
LOC_Os08g42980
Os.27706.1.S1_at--329--3051Chr08:27035964..27035988 (25 bp)
AATCTGATACTTGCCTCAGGTTCCA
LOC_Os08g42980
Os.27706.1.S1_at--600--7891Chr08:27035982..27036006 (25 bp)
GGTTCCAAACCGATGAACGCCGATT
LOC_Os08g42980
Os.27706.1.S1_at--300--4151Chr08:27035999..27036023 (25 bp)
CGCCGATTACCGTTGATACTATAGT
LOC_Os08g42980
Os.27706.1.S1_at--823--2111Chr08:27036032..27036056 (25 bp)
ACATGTGTTGGTTCGTTTTGGTGCA
LOC_Os08g42980
Os.27706.1.S1_at--769--4671Chr08:27036218..27036242 (25 bp)
GCGGGATAATTCTGCTCCACAAATC
NONE
Os.27706.1.S1_at--855--571Chr08:27036240..27036264 (25 bp)
ATCCAAGATACCCAACAGCTGTTTA
NONE
Os.27706.1.S1_at--657--6031Chr08:27036297..27036321 (25 bp)
GAGTTGAAACCACATCTACACCAGA
NONE
Target Sequence 
TCCATCGAATCACAGTGCTCTTGCTGATCATCCTTCAAAGCCACCCCCTGGTCCTCGTATGCCAGATGGCACAAGAGGAT
TTACCATGGGGCGAGGAAAGCCACTCAATCCTACCAATGCTGTTTAATGGCAGTGGCCATGCCGGTGGCAGCCTGTTGCC
CTGTTCCCTCTTGCNAATCTGATACTTGCCTCAGGTTCCAAACCGATGAACGCCGATTACCGTTGATACTATAGTTAGAT
ACAACATGTGTTGGTTCGTTTTGGTGCAAGATTCTGCAGAGAAAAGTTTTACCTGGTACATGCATGTATACTGGTACAGC
AGTGGTGCTGGCAATGTGAACATGTCTTTTGATATCTGGATGCTAGTTAATTTAGCAAAATATGTAGATATAGATGAAAA
ATGAGGTGTCTGATCAATGATCATTTGCAGCGGGATAATTCTGCTCCACAAATCCAAGATACCCAACAGCTGTTTAAAAG
CCTTCAACTTGGAAGGCATGCAATTTCAGAGTTGAAACCACATCTACACCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27706.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis