Browse Element(s) Details


Os.27751.1.S1_at

Description gb:AK072928.1
DB_XREF= gi:32982951
TID=Os.27751.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.27751 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023144G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023144G04, full insert sequence.
FL= gb:AK072928.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g362106/11Terpene synthase, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36200OsAffx.12370.2.S1_at11/112+21817005..21817721hypothetical protein
LOC_Os02g36200OsAffx.1728.1.S1_at2/112+21817005..21817721hypothetical protein
LOC_Os02g36210Os.27751.1.S1_at6/112+21835195..21841696Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os02g36220Os.49721.1.S1_at11/112+21847712..21857723Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os02g36220OsAffx.24594.1.S1_at1/112+21847712..21857723Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os02g36230Os.14919.1.S1_at2/112+21861613..21863711transposon protein, putative, Mutator sub-class
LOC_Os02g36230OsAffx.15585.1.S1_at1/112+21861613..21863711transposon protein, putative, Mutator sub-class
LOC_Os02g36230OsAffx.29313.1.S1_at1/112+21861613..21863711transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009686biological_processgibberellic acid biosynthesis
GO:0009740biological_processgibberellic acid mediated signaling
GO:0016106biological_processsesquiterpenoid biosynthesis
GO:0009507cellular_componentchloroplast
GO:0009536cellular_componentplastid
GO:0009899molecular_functionent-kaurene synthase activity
GO:0009905molecular_functionent-copalyl diphosphate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27751.1.S1_at--46--7771Chr02:21841456..21841480 (25 bp)
GGTGAAGAGCTTTTGCTACGTCGCT
LOC_Os02g36210
Os.27751.1.S1_at--681--71Chr02:21841482..21841506 (25 bp)
ATTGCTCGCCCGAAACAATCGATGG
LOC_Os02g36210
Os.27751.1.S1_at--456--3051Chr02:21841498..21841522 (25 bp)
AATCGATGGGCACATCTCCAAGGTT
LOC_Os02g36210
Os.27751.1.S1_at--276--2791Chr02:21841578..21841602 (25 bp)
AAGAGTTGTGTCTACCAGCATGGCT
LOC_Os02g36210
Os.27751.1.S1_at--664--9971Chr02:21841590..21841614 (25 bp)
TACCAGCATGGCTCGTAAAGTGATG
LOC_Os02g36210
Os.27751.1.S1_at--550--7211Chr02:21841649..21841673 (25 bp)
GTCGATATTTGTTTCACTTGATGGT
LOC_Os02g36210
Os.27751.1.S1_at--802--7371Chr02:21841795..21841819 (25 bp)
GTGAGACGTCAGCTATATGAATTGT
NONE
Os.27751.1.S1_at--447--2391Chr02:21841834..21841858 (25 bp)
AAACTTTGCACATCGATATGCCATT
NONE
Os.27751.1.S1_at--801--3671Chr02:21841902..21841926 (25 bp)
CTTTCTTTTGTTTCCCATCTCAATG
NONE
Os.27751.1.S1_at--1129--6831Chr02:21841911..21841935 (25 bp)
GTTTCCCATCTCAATGACTACGAGT
NONE
Os.27751.1.S1_at--741--1871Chr02:21841930..21841954 (25 bp)
ACGAGTTCTAGATCTTCTTTGCAAA
NONE
Target Sequence 
GGTGAAGAGCTTTTGCTACGTCGCTCATTGCTCGCCCGAAACAATCGATGGGCACATCTCCAAGGTTTTGTTCGAGGATG
TCAATTAGGAAAATGGTTGACTACTAGAAAGGCAATAAAAACAAGAGTTGTGTCTACCAGCATGGCTCGTAAAGTGATGA
CTGCGAAAATTTTCTCAAAGTGAGATGAATTTAGTCGATATTTGTTTCACTTGATGGTACNCCAGATACACATGTTGTTA
TAAGTTGNTCTGATAGCTAGTATACTATATATATATATATATATATATNNNNNATATATATATGAATATGTTCTGAAGTG
AGACGTCAGCTATATGAATTGTCTTATTTCAGAACNAAACTTTGCACATCGATATGCCATTAAAAATAAATATGTAAATA
TGTGAACCTTTTTTTCTTTGTGCTCTTTCTTTTGTTTCCCATCTCAATGACTACGAGTTCTAGATCTTCTTTGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27751.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis