Browse Element(s) Details


Os.27776.1.S1_at

Description gb:AK071160.1
DB_XREF= gi:32981183
TID=Os.27776.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27776 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023076J23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023076J23, full insert sequence.
FL= gb:AK071160.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3310011/11guanylate kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g33080Os.11364.1.S1_at11/1112+19976847..199802972-oxoglutarate/malate translocator, chloroplast precursor, putative, expressed
LOC_Os12g33090OsAffx.31999.2.S1_at11/1112+19990275..19992189Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os12g33100Os.27776.1.S1_at11/1112+20000190..20004313guanylate kinase, putative, expressed
LOC_Os12g33110OsAffx.32000.1.S1_at10/1112+20011516..20012263hypothetical protein
LOC_Os12g33120Os.12120.1.S1_at11/1112+20013727..20014553expressed protein
LOC_Os12g33130Os.5390.1.S1_at10/1112+20017000..20017755expressed protein
LOC_Os12g33140OsAffx.32001.1.S1_at11/1112+20023809..20024456hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009117biological_processnucleotide metabolism
GO:0004385molecular_functionguanylate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27776.1.S1_at--911--6491Chr12:20000629..20000653 (25 bp)
GATATCCCCGGTTAACTAGATAACT
LOC_Os12g33100
Os.27776.1.S1_at--584--851Chr12:20000588..20000612 (25 bp)
ATGGCATTGCAGAAGCACTGACGAG
LOC_Os12g33100
Os.27776.1.S1_at--322--8871Chr12:20000570..20000594 (25 bp)
TGACGAGAAACTTTTGATCAACCTG
LOC_Os12g33100
Os.27776.1.S1_at--347--6451Chr12:20000555..20000579 (25 bp)
GATCAACCTGCTTGAGATAACAGAT
LOC_Os12g33100
Os.27776.1.S1_at--806--2131Chr12:20000536..20000560 (25 bp)
ACAGATTCAGAAACACCCTAGGACA
LOC_Os12g33100
Os.27776.1.S1_at--183--4331Chr12:20000481..20000505 (25 bp)
CCATTTGTTATTTGTTTGCCGGAGA
LOC_Os12g33100
Os.27776.1.S1_at--202--6211Chr12:20000458..20000482 (25 bp)
GAGGCATCAGCTACTAGGTTCATCA
LOC_Os12g33100
Os.27776.1.S1_at--678--8211Chr12:20000406..20000430 (25 bp)
GGAATTGTACCGTATCATTGAGGAA
LOC_Os12g33100
Os.27776.1.S1_at--4--711Chr12:20000329..20000353 (25 bp)
ATGAGGGCTCCTTTATCAGTGAAGT
LOC_Os12g33100
Os.27776.1.S1_at--740--8571Chr12:20000257..20000281 (25 bp)
TGGATTATGCTGTGCGTCCATCCTG
LOC_Os12g33100
Os.27776.1.S1_at--513--7271Chr12:20000242..20000266 (25 bp)
GTCCATCCTGATTCTCAAGCTAATT
LOC_Os12g33100
Target Sequence 
GATATCCCCGGTTAACTAGATAACTCAAAACATTGTTGCTGATGGCATTGCAGAAGCACTGACGAGAAACTTTTGATCAA
CCTGCTTGAGATAACAGATTCAGAAACACCCTAGGACAAAGGAAATAAAAAAAACATGGAATTCATTTCCATTTGTTATT
TGTTTGCCGGAGAGGCATCAGCTACTAGGTTCATCATACCTGAACTAGGTGAAATCATAGTGAGGAATTGTACCGTATCA
TTGAGGAATTGTTTGCTTCATTGTTCTTGAGAGGTTTTTTTGTTCGTTGAACGGAGTACAATGAGGGCTCCTTTATCAGT
GAAGTAAAAGAATTCATGTAGTCCTATAAACATTAATAGTTAATCCATTTGCTGGATTATGCTGTGCGTCCATCCTGATT
CTCAAGCTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27776.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis