Browse Element(s) Details


Os.27793.1.S1_x_at

Description gb:AK108037.1
DB_XREF= gi:32993246
TID=Os.27793.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27793 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-C10, full insert sequence.
FL= gb:AK108037.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1443011/11Peroxidase 52 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14410OsAffx.22699.1.S1_x_at1/112+7910272..7917027retrotransposon protein, putative, unclassified
LOC_Os02g14420OsAffx.12034.1.S1_at11/112+7922249..7922954hypothetical protein
LOC_Os02g14430Os.27793.1.S1_at11/112+7938410..7939831Peroxidase 52 precursor, putative, expressed
LOC_Os02g14430Os.27793.1.S1_x_at11/112+7938410..7939831Peroxidase 52 precursor, putative, expressed
LOC_Os02g14440Os.15355.1.S1_x_at11/112+7948542..7950059Cationic peroxidase 1 precursor, putative, expressed
LOC_Os02g14450OsAffx.24247.1.S1_at10/112+7952133..7953676hypothetical protein
LOC_Os02g14460NANA2+7959781..7960983Peroxidase 52 precursor, putative
LOC_Os02g14470OsAffx.24248.1.S1_at11/112+7964708..7965138hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27793.1.S1_x_at--331--9371Chr02:7939350..7939374 (25 bp)
TCGACGCGCAGACGCAGAACGTGTT
LOC_Os02g14430
Os.27793.1.S1_x_at--156--4112Chr02:7939362..7939386 (25 bp)
CGCAGAACGTGTTCGACAACGCCTA
LOC_Os02g14430
Os.27793.1.S1_x_at--147--6251Chr02:7939602..7939626 (25 bp)
GATGGATTATTGCTTATATAAGTGT
LOC_Os02g14430
Os.27793.1.S1_x_at--712--8791Chr02:7939661..7939685 (25 bp)
TGTTCATGGTGATTCGCAGCTTTGA
LOC_Os02g14430
Os.27793.1.S1_x_at--314--3511Chr02:7939665..7939689 (25 bp)
CATGGTGATTCGCAGCTTTGATGTT
LOC_Os02g14430
Os.27793.1.S1_x_at--1069--6571Chr02:7939671..7939695 (25 bp)
GATTCGCAGCTTTGATGTTGGTTAC
LOC_Os02g14430
Os.27793.1.S1_x_at--431--9351Chr02:7939674..7939698 (25 bp)
TCGCAGCTTTGATGTTGGTTACAAA
LOC_Os02g14430
Os.27793.1.S1_x_at--1102--7751Chr02:7939699..7939723 (25 bp)
GGTGACCAACCCATATATACACATG
LOC_Os02g14430
Os.27793.1.S1_x_at--734--5851Chr02:7939702..7939726 (25 bp)
GACCAACCCATATATACACATGATA
LOC_Os02g14430
Os.27793.1.S1_x_at--354--351Chr02:7939738..7939762 (25 bp)
ATAAGTAAGCTATGGAAAGTACACA
LOC_Os02g14430
Os.27793.1.S1_x_at--466--8571Chr02:7939786..7939810 (25 bp)
TGGATCAACCAAGCAAGGTCATTAT
LOC_Os02g14430
Target Sequence 
TCGACGCGCAGACGCAGAACGTGTTCGACAACGCCTACTACCGCAACCTGCTCGCCCAGCGCGGCCTGCTCCACTCCGAC
CAGGAGCTCTTCAACGGCGGCTCGCAGGACGCGCTGGTGCAGCAGTACAGCTCCAACCCGGCGCTGTTCGCCGCCGACTT
CGCCGCCGCCATGATAAAGATGGGGAACATCAAACCGCTCACCGGAGCCGCCGGCCAGATCAGGCGCAGCTGCAGGGCCG
TCAACAGCAGCTGATGGATTATTGCTTATATAAGTGTAATTAATTAAGGCATTAAACATGCTTAATTAATATGTTCATGG
TGATTCGCAGCTTTGATGTTGGTTACAAAGGTGACCAACCCATATATACACATGATATACATGGATGAATAAGTAAGCTA
TGGAAAGTACACATATGACCTTGGGTTGAAAAGTGATGGATCAACCAAGCAAGGTCATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27793.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis