Browse Element(s) Details


Os.27821.1.S1_s_at

Description gb:AK120285.1
DB_XREF= gi:37989908
TID=Os.27821.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27821 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013049P04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013049P04, full insert sequence.
FL= gb:AK120285.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3358011/11digalactosyldiacylglycerol synthase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33540NANA2+19936642..19942502translational activator family protein, putative, expressed
LOC_Os02g33550Os.10576.1.S1_at11/112+19948702..19949786harpin-induced family protein, putative, expressed
LOC_Os02g33560Os.49660.1.S1_at10/112+19956730..19962055expressed protein
LOC_Os02g33570OsAffx.2843.1.S1_at11/112+19965631..19966110hypothetical protein
LOC_Os02g33580Os.27821.1.S1_s_at11/112+19967319..19971585digalactosyldiacylglycerol synthase 1, putative, expressed
LOC_Os02g33590Os.55653.1.S1_at8/112+19975666..19977308U-box domain containing protein, expressed
LOC_Os02g33590OsAffx.19551.1.S1_x_at5/112+19975666..19977308U-box domain containing protein, expressed
LOC_Os02g33600NANA2+19995126..19995953VQ motif family protein

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0009247biological_processglycolipid biosynthesis
GO:0016036biological_processcellular response to phosphate starvation
GO:0019375biological_processgalactolipid biosynthesis
GO:0042550biological_processphotosystem I stabilization
GO:0005739cellular_componentmitochondrion
GO:0009707cellular_componentchloroplast outer membrane
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0035250molecular_functionUDP-galactosyltransferase activity
GO:0046480molecular_functiongalactolipid galactosyltransferase activity
GO:0046481molecular_functionUDP-galactose:MGDG galactosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27821.1.S1_s_at--464--7891Chr02:19971009..19971033 (25 bp)
GGTTCATGGAGTACTCAGACCTCGA
LOC_Os02g33580
Os.27821.1.S1_s_at--1086--9751Chr02:19971100..19971124 (25 bp)
TAATCTGTCGGACGCCATGGATGGA
LOC_Os02g33580
Os.27821.1.S1_s_at--439--8551Chr02:19971121..19971145 (25 bp)
TGGAGGATTGGCGTTTGCTCACCAC
LOC_Os02g33580
Os.27821.1.S1_s_at--427--9611Chr02:19971139..19971163 (25 bp)
TCACCACTGCCTAACTGGTAGCGAG
LOC_Os02g33580
Os.27821.1.S1_s_at--677--6951Chr02:19971156..19971180 (25 bp)
GTAGCGAGGTTCTCAGGCTGGCAAC
LOC_Os02g33580
Os.27821.1.S1_s_at--903--3911Chr02:19971173..19971197 (25 bp)
CTGGCAACGGGAGCGATTCCTGGTA
LOC_Os02g33580
Os.27821.1.S1_s_at--916--8571Chr02:19971193..19971217 (25 bp)
TGGTACGCGCGACTACGACAAGCAA
LOC_Os02g33580
Os.27821.1.S1_s_at--1043--2851Chr02:19971249..19971273 (25 bp)
AAGTGCAGCACCCTGTATATGGTTG
LOC_Os02g33580
Os.27821.1.S1_s_at--304--4971Chr02:19971292..19971316 (25 bp)
GCATCTGCATGCACTAAGTTACTGG
LOC_Os02g33580
Os.27821.1.S1_s_at--1095--7831Chr02:19971489..19971513 (25 bp)
GGTACTAGGTTCCTTGTCAACATGA
LOC_Os02g33580
Os.27821.1.S1_s_at--403--671Chr02:19971510..19971534 (25 bp)
ATGAAGCTCTCCTTTGTGCAGACAG
LOC_Os02g33580
Target Sequence 
GGTTCATGGAGTACTCAGACCTCGACAAGGTTCTCAGCCAACCTGTTACAGAAGGCGTGCACAGAAGCAAGACGAGAAGA
ACAATTCAGAGTAATCTGTCGGACGCCATGGATGGAGGATTGGCGTTTGCTCACCACTGCCTAACTGGTAGCGAGGTTCT
CAGGCTGGCAACGGGAGCGATTCCTGGTACGCGCGACTACGACAAGCAACACTGCGTGGACATGGGCCTCCTGCCGCCTC
AAGTGCAGCACCCTGTATATGGTTGGTGAAGTAAACCAAACCTGCATCTGCATGCACTAAGTTACTGGATAGTTTGTAGG
TACATATGTACTGTACATGACAAGTCATGTAGATCTTTGTAAAGNTCTCGTACTGTAACATGGGTAACTAGTNTAAGCTA
TTGTTGTCATTGTATTGTACTGCTTGTAGTAATATTGTTTTTTGTCAGTAAAATTGGAGCTTCAAGTATATATGGTACGT
TGGTACTAGGTTCCTTGTCAACATGAAGCTCTCCTTTGTGCAGACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27821.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis