Browse Element(s) Details


Os.10576.1.S1_at

Description gb:AK109402.2
DB_XREF= gi:42821716
TID=Os.10576.1
CNT=21
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.10576 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-301-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-301-G02, full insert sequence.
FL= gb:AK061396.1 gb:AK104564.1 gb:AK104600.1 gb:AK060001.1 gb:AK109402.2 gb:AK109400.2 gb:AK065946.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3355011/11harpin-induced family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33510Os.53217.1.S1_x_at4/112+19929142..19930348retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g33510Os.43567.1.S1_x_at3/112+19929142..19930348retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g33510Os.38172.1.S1_x_at2/112+19929142..19930348retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g33520NANA2+19931793..19932983retrotransposon protein, putative, unclassified
LOC_Os02g33530NANA2+19933501..19935940retrotransposon protein, putative, unclassified, expressed
LOC_Os02g33540NANA2+19936642..19942502translational activator family protein, putative, expressed
LOC_Os02g33550Os.10576.1.S1_at11/112+19948702..19949786harpin-induced family protein, putative, expressed
LOC_Os02g33560Os.49660.1.S1_at10/112+19956730..19962055expressed protein
LOC_Os02g33570OsAffx.2843.1.S1_at11/112+19965631..19966110hypothetical protein
LOC_Os02g33580Os.27821.1.S1_s_at11/112+19967319..19971585digalactosyldiacylglycerol synthase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10576.1.S1_at--590--9331Chr02:19949215..19949239 (25 bp)
TCGCCGACGCGCTCAGGCAGGACGT
LOC_Os02g33550
Os.10576.1.S1_at--106--5071Chr02:19949116..19949140 (25 bp)
GCAGCTACCACCTCTTTGTCAGCTG
LOC_Os02g33550
Os.10576.1.S1_at--1048--9631Chr02:19948984..19949008 (25 bp)
TCAGGTTCACGCAGCCGACAGGGTG
LOC_Os02g33550
Os.10576.1.S1_at--986--9031Chr02:19948961..19948985 (25 bp)
TGCAGCGTCGAGGTGTGAGTCACAA
LOC_Os02g33550
Os.10576.1.S1_at--662--7091Chr02:19948943..19948967 (25 bp)
GTCACAAATTTGAGTAGCGGCTAGT
LOC_Os02g33550
Os.10576.1.S1_at--225--1611Chr02:19948928..19948952 (25 bp)
AGCGGCTAGTGGCAATATGGTAATT
LOC_Os02g33550
Os.10576.1.S1_at--835--91Chr02:19948906..19948930 (25 bp)
ATTAATTAAGTTCATCGGTCGCGTT
LOC_Os02g33550
Os.10576.1.S1_at--1071--7791Chr02:19948890..19948914 (25 bp)
GGTCGCGTTAATCCGCAAGCTGTTA
LOC_Os02g33550
Os.10576.1.S1_at--637--751Chr02:19948848..19948872 (25 bp)
ATGTAGCTCATGCATACTCTATGTG
LOC_Os02g33550
Os.10576.1.S1_at--808--6991Chr02:19948808..19948832 (25 bp)
GTACGTTCATATGTATACCATTGCA
LOC_Os02g33550
Os.10576.1.S1_at--1103--7431Chr02:19948761..19948785 (25 bp)
GTGTACTAGTATAATTTCGTTGCTG
LOC_Os02g33550
Target Sequence 
TCGCCGACGCGCTCAGGCAGGACGTCGCCGCCGGGTACGTCGCGCTGCAGGTGAAGGTCGACGGCCGCGTCAAGTGGAAG
GTCGGCAGCTGGGTCTCCGGCAGCTACCACCTCTTTGTCAGCTGCCCCGCCATGCTCGCCTCCGCCGGACCAGGCGGCGT
CGGCCCCATGCCTCTCGGCGGCGCCTCCGCCGCCGTCGTGAACGGCACCGGCGCCGGCGCCGTCGCGTCGCTCAGGTTCA
CGCAGCCGACAGGGTGCAGCGTCGAGGTGTGAGTCACAAATTTGAGTAGCGGCTAGTGGCAATATGGTAATTAATTAAGT
TCATCGGTCGCGTTAATCCGCAAGCTGTTAATTTTTTTTTTGTGTTCATGTAGCTCATGCATACTCTATGTGAGAGAATA
AAGTTACGTACGTTCATATGTATACCATTGCAACACATTAATTTCCTATATGAAGTGTACTAGTATAATTTCGTTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10576.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis