Browse Element(s) Details


Os.27874.2.S1_x_at

Description gb:AK064046.1
DB_XREF= gi:32974064
TID=Os.27874.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27874 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023138F22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-125-D08, full insert sequence.
FL= gb:AK064046.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4884011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48800Os.11501.1.S1_at11/115+27884293..27887656fiber protein Fb2, putative, expressed
LOC_Os05g48810Os.35463.1.S1_at11/115+27889125..27891336DnaJ domain containing protein, expressed
LOC_Os05g48820Os.6086.2.S1_x_at10/115+27892394..27903100DDT domain containing protein, expressed
LOC_Os05g48830OsAffx.15157.1.S1_at11/115+27904880..27905338hypothetical protein
LOC_Os05g48840Os.27874.2.S1_x_at11/115+27906480..27907394expressed protein
LOC_Os05g48850Os.53950.1.S1_at11/115+27919894..27921728no apical meristem, putative, expressed
LOC_Os05g48860Os.56989.1.S1_at11/115+27926242..27927335Guanylate-binding protein, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27874.2.S1_x_at--299--3031Chr05:27907340..27907364 (25 bp)
AATGCGAGCAAGTGCCAGGGCATCA
LOC_Os05g48840
Os.27874.2.S1_x_at--104--4011Chr05:27906794..27906818 (25 bp)
CGTCGCGCTGTTCGACCAGAACGTG
LOC_Os05g48840
Os.27874.2.S1_x_at--83--7651Chr05:27906691..27906715 (25 bp)
GGGAGCATGCTGTTCGTGAGCTTCC
LOC_Os05g48840
Os.27874.2.S1_x_at--1112--1991Chr05:27906638..27906662 (25 bp)
ACTCTCGCCGCGCTAATATTTAGTA
LOC_Os05g48840
Os.27874.2.S1_x_at--284--10031Chr05:27906618..27906642 (25 bp)
TAGTAGAATTCTGCCTGCACGTACG
LOC_Os05g48840
Os.27874.2.S1_x_at--709--3331Chr05:27906601..27906625 (25 bp)
CACGTACGCCTATATGTGCATATCC
LOC_Os05g48840
Os.27874.2.S1_x_at--712--271Chr05:27906590..27906614 (25 bp)
ATATGTGCATATCCTCGTCTTAGTT
LOC_Os05g48840
Os.27874.2.S1_x_at--1117--9371Chr05:27906576..27906600 (25 bp)
TCGTCTTAGTTCTTTGGACCATTAA
LOC_Os05g48840
Os.27874.2.S1_x_at--360--7371Chr05:27906534..27906558 (25 bp)
GTGACACGAACGAACACACTGTAAA
LOC_Os05g48840
Os.27874.2.S1_x_at--438--8731Chr05:27906515..27906539 (25 bp)
TGTAAAGCTGATCACGGCCCCAATG
LOC_Os05g48840
Os.27874.2.S1_x_at--50--4811Chr05:27906489..27906513 (25 bp)
GCTCGCAAGGAGTCGATGCTTACAA
LOC_Os05g48840
Target Sequence 
AATGCGAGCAAGTGCCAGGGCATCATCATCATCATCGCCGTCGCGCTGTTCGACCAGAACGTGGTGTCGTGCTTCTACCC
GGTGCCATCCGAGGGCACGAGGCAGGTGCTCACGGCGCTGCCGATCGCCATCGGCGTCGTCGGGAGCATGCTGTTCGTGA
GCTTCCCGACCACACGCCATGGCATCGGGTTCCCACTCTCGCCGCGCTAATATTTAGTAGAATTCTGCCTGCACGTACGC
CTATATGTGCATATCCTCGTCTTAGTTCTTTGGACCATTAATTGCATGTAATTAAATTGTGACACGAACGAACACACTGT
AAAGCTGATCACGGCCCCAATGGGCTCGCAAGGAGTCGATGCTTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27874.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis