Browse Element(s) Details


Os.27964.1.S1_at

Description gb:AK099537.1
DB_XREF= gi:32984746
TID=Os.27964.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27964 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013032A17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013032A17, full insert sequence.
FL= gb:AK099537.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2915011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29100OsAffx.31069.5.S1_at3/113+16477887..16481348retrotransposon protein, putative, unclassified
LOC_Os03g29100OsAffx.31069.3.S1_at3/113+16477887..16481348retrotransposon protein, putative, unclassified
LOC_Os03g29100OsAffx.31069.5.S1_x_at2/113+16477887..16481348retrotransposon protein, putative, unclassified
LOC_Os03g29100Os.53479.1.S1_x_at2/113+16477887..16481348retrotransposon protein, putative, unclassified
LOC_Os03g29100OsAffx.31069.2.S1_x_at1/113+16477887..16481348retrotransposon protein, putative, unclassified
LOC_Os03g29110NANA3+16486614..16488056transposon protein, putative, unclassified
LOC_Os03g29120NANA3+16491037..16494077retrotransposon protein, putative, unclassified
LOC_Os03g29130NANA3+16498210..16501932retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g29140NANA3+16503133..16504786hypothetical protein
LOC_Os03g29150Os.27964.1.S1_at11/113+16506119..16516180NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g29150OsAffx.25272.1.S1_at11/113+16506119..16516180NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g29170Os.26754.1.S1_at11/113+16526730..16532581NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g29180Os.12950.1.S1_at10/113+16534924..16540918LOC496049 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006694biological_processsteroid biosynthesis
GO:0003854molecular_function3-beta-hydroxy-delta5-steroid dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27964.1.S1_at--483--7471Chr03:16515899..16515923 (25 bp)
GTGTGAATTCATTTTGCTTCGACCA
LOC_Os03g29150
Os.27964.1.S1_at--762--4911Chr03:16515914..16515938 (25 bp)
GCTTCGACCATATCTAAGACCTCAT
LOC_Os03g29150
Os.27964.1.S1_at--782--1731Chr03:16515932..16515956 (25 bp)
ACCTCATACATGGAGCAAGTTCTAT
LOC_Os03g29150
Os.27964.1.S1_at--6--8071Chr03:16515943..16515967 (25 bp)
GGAGCAAGTTCTATTGCTATTGAAG
LOC_Os03g29150
Os.27964.1.S1_at--315--6291Chr03:16515989..16516013 (25 bp)
GATGATAACCAATGGTCGATGGCAA
LOC_Os03g29150
Os.27964.1.S1_at--175--7811Chr03:16516002..16516026 (25 bp)
GGTCGATGGCAATGATGTCTACACA
LOC_Os03g29150
Os.27964.1.S1_at--512--6271Chr03:16516015..16516039 (25 bp)
GATGTCTACACATATAAGTTTGATG
LOC_Os03g29150
Os.27964.1.S1_at--522--2831Chr03:16516060..16516084 (25 bp)
AAGTATTGTAATCTTGTTGGGAACA
LOC_Os03g29150
Os.27964.1.S1_at--425--1471Chr03:16516102..16516126 (25 bp)
AGAATGGGCTTCCACTTGTTGCAGT
LOC_Os03g29150
Os.27964.1.S1_at--426--6671Chr03:16516119..16516143 (25 bp)
GTTGCAGTCAACATAATTGTAATAT
LOC_Os03g29150
Os.27964.1.S1_at--333--10371Chr03:16516156..16516180 (25 bp)
TTTTTATTGCTATATCTCTTTATGC
LOC_Os03g29150
Target Sequence 
GTGTGAATTCATTTTGCTTCGACCATATCTAAGACCTCATACATGGAGCAAGTTCTATTGCTATTGAAGATGTAAAATTT
ATTTGACATGGATGATAACCAATGGTCGATGGCAATGATGTCTACACATATAAGTTTGATGTATTTTTTTTACAAATGGC
TAAGTATTGTAATCTTGTTGGGAACAATATTGATTCTTATTGGAGAATGGGCTTCCACTTGTTGCAGTCAACATAATTGT
AATATATATCTGTGAGATTTTTATTGCTATATCTCTTTATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27964.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis