Browse Element(s) Details


Os.27991.1.S1_at

Description gb:AK101995.1
DB_XREF= gi:32987204
TID=Os.27991.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.27991 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033079I19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033079I19, full insert sequence.
FL= gb:AK101995.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1785011/11histone acetyl transferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17810Os.52715.1.S1_at11/119+10897051..10899226expressed protein
LOC_Os09g17820OsAffx.29901.1.S1_at11/119+10899665..10900382hypothetical protein
LOC_Os09g17830Os.8657.1.S1_at11/119+10904712..10908704Protein transport protein Sec61 alpha subunit isoform 2, putative, expressed
LOC_Os09g17840Os.8657.1.S1_at11/119+10914274..10918390Protein transport protein Sec61 alpha subunit isoform 2, putative, expressed
LOC_Os09g17840Os.47940.1.S1_at2/119+10914274..10918390Protein transport protein Sec61 alpha subunit isoform 2, putative, expressed
LOC_Os09g17840Os.37995.1.S1_at1/119+10914274..10918390Protein transport protein Sec61 alpha subunit isoform 2, putative, expressed
LOC_Os09g17850Os.27991.1.S1_at11/119+10921465..10925975histone acetyl transferase, putative, expressed
LOC_Os09g17860OsAffx.17763.1.S1_at11/119+10926163..10926973expressed protein
LOC_Os09g17870Os.47940.1.S1_at11/119+10927395..10929717Cytidylyltransferase family protein, expressed
LOC_Os09g17870OsAffx.24902.1.S1_s_at1/119+10927395..10929717Cytidylyltransferase family protein, expressed
LOC_Os09g17880OsAffx.29902.1.S1_at10/119+10935862..10938399leaf senescence-associated receptor-like protein kinase, putative
LOC_Os09g17880Os.57395.1.S1_at1/119+10935862..10938399leaf senescence-associated receptor-like protein kinase, putative
LOC_Os09g17890OsAffx.17764.1.S1_at11/119+10942485..10946943hypothetical protein
LOC_Os09g17900OsAffx.17765.1.S1_at11/119+10949430..10951681hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004402molecular_functionhistone acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27991.1.S1_at--1125--4051Chr09:10925432..10925456 (25 bp)
CGAGATACTTGGCACTTCCACTGGC
LOC_Os09g17850
Os.27991.1.S1_at--295--2011Chr09:10925460..10925484 (25 bp)
AACGGGAAGCGGCTCGTCCAAATGC
LOC_Os09g17850
Os.27991.1.S1_at--1026--2271Chr09:10925479..10925503 (25 bp)
AAATGCCGAGCAATTTCGACGAGGA
LOC_Os09g17850
Os.27991.1.S1_at--1072--6171Chr09:10925499..10925523 (25 bp)
GAGGAGACATGCTTTGCTGTGTACT
LOC_Os09g17850
Os.27991.1.S1_at--865--8811Chr09:10925558..10925582 (25 bp)
TGTTGAGCAGCAGCCTGAGGATCTC
LOC_Os09g17850
Os.27991.1.S1_at--227--9531Chr09:10925579..10925603 (25 bp)
TCTCAAGACCCAGGAGCAGCAGCTG
LOC_Os09g17850
Os.27991.1.S1_at--430--2391Chr09:10925676..10925700 (25 bp)
AAACTGAGCGTTTCTTGCTCCGTAT
LOC_Os09g17850
Os.27991.1.S1_at--641--4471Chr09:10925756..10925780 (25 bp)
GCCTGATGTCTCTTTGTAGCTCAAG
LOC_Os09g17850
Os.27991.1.S1_at--266--4631Chr09:10925836..10925860 (25 bp)
GCGTATTCTACTTGAGCTTTTCCGA
LOC_Os09g17850
Os.27991.1.S1_at--300--4891Chr09:10925851..10925875 (25 bp)
GCTTTTCCGAGATGAACTTCCTTCA
LOC_Os09g17850
Os.27991.1.S1_at--691--3731Chr09:10925940..10925964 (25 bp)
CTAACCTGTATGCTGCTGCAATTGA
LOC_Os09g17850
Target Sequence 
CGAGATACTTGGCACTTCCACTGGCCCCAACGGGAAGCGGCTCGTCCAAATGCCGAGCAATTTCGACGAGGAGACATGCT
TTGCTGTGTACTGGACACANGACGGTGGGGATGCAGATGACCAAACTGTTGAGCAGCAGCCTGAGGATCTCAAGACCCAG
GAGCAGCAGCTGAATGAGGTGGTTGACAGCCAAATGGAAGAGATCGTCGAGNTAGCCAAGAACGTCACCTCACGCGGCAA
GGATAAACTGAGCGTTTCTTGCTCCGTATGACGGTACGAGTGGTAACTTGGAAAAAACTGAATGCTGCATTGCAGCCACA
GCTCGCCTGATGTCTCTTTGTAGCTCAAGACTTCAGGGTAGAAACTAGAGGCTAGAAAATTTTCAGGTCTGAGAATTATG
TTCTGCGTATTCTACTTGAGCTTTTCCGAGATGAACTTCCTTCAGCNTAGTAATCTTAGTTATCATTCGAAATGATTTGC
GTGCTATNTATTGTGATGTTAAATGGTACTAACCTGTATGCTGCTGCAATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27991.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis