Browse Element(s) Details


Os.28000.1.A1_x_at

Description gb:BI305990
DB_XREF= gi:14981312
DB_XREF=NL_2_M17
CLONE=NL_2_M17
TID=Os.28000.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.28000 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_197284.1 (A.thaliana) peroxidase ATP13a (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g155004/11Peroxidase family protein
LOC_Os09g155104/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15460NANA9+9458301..9462945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g15470Os.27691.1.S1_x_at4/119+9464788..9470500retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g15480Os.14294.1.S1_at11/119+9475481..9477841Ser/Thr-rich protein T10 in DGCR region, putative, expressed
LOC_Os09g15490NANA9+9482798..9483515hypothetical protein
LOC_Os09g15500OsAffx.29854.1.S1_x_at7/119+9485054..9486123Peroxidase family protein
LOC_Os09g15500OsAffx.29854.1.S1_at6/119+9485054..9486123Peroxidase family protein
LOC_Os09g15500Os.28000.1.A1_x_at4/119+9485054..9486123Peroxidase family protein
LOC_Os09g15510OsAffx.29854.1.S1_x_at11/119+9489520..9491543Peroxidase family protein, expressed
LOC_Os09g15510OsAffx.29854.1.S1_at11/119+9489520..9491543Peroxidase family protein, expressed
LOC_Os09g15510Os.28000.1.A1_x_at4/119+9489520..9491543Peroxidase family protein, expressed
LOC_Os09g15520Os.6617.1.S1_s_at11/119+9495345..9496052Oleosin family protein, expressed
LOC_Os09g15530OsAffx.29855.1.S1_at11/119+9496190..9497538hypothetical protein
LOC_Os09g15540Os.56211.1.S1_at11/119+9497903..9499492F-box domain containing protein, expressed
LOC_Os09g15540OsAffx.9167.1.S1_x_at1/119+9497903..9499492F-box domain containing protein, expressed
LOC_Os09g15550Os.56250.1.S1_at11/119+9500360..9501868F-box domain containing protein, expressed
LOC_Os09g15560Os.55706.1.S1_at11/119+9504693..9506076F-box domain containing protein, expressed
LOC_Os09g15570OsAffx.29856.1.S1_at11/119+9510313..9512124F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28000.1.A1_x_at--940--9031NONE
TGCAGGGCATCGTCCGTGCACGCTT
NONE
Os.28000.1.A1_x_at--802--9251Chr09:9485247..9485271 (25 bp)
TCCTCCGCATGCAGTTCCACGAGTG
LOC_Os09g15500
Os.28000.1.A1_x_at--887--1871Chr09:9491224..9491329 (25 bp)
ACGAGTGCGCCGTCAATGGGTGCGA
LOC_Os09g15510
Os.28000.1.A1_x_at--726--9731NONE
TCAATGGGTGCGACGGCGGACTGCT
NONE
Os.28000.1.A1_x_at--1134--5711NONE
GACTGCTGATCGACGGGCCAGGCAC
NONE
Os.28000.1.A1_x_at--37--5752Chr09:9485389..9485413 (25 bp)
GACGGGCCAGGCACGGAGAAGACGG
LOC_Os09g15500
Os.28000.1.A1_x_at--294--8371Chr09:9485548..9485572 (25 bp)
GGCGGGCAGCCGTACGCGGTGCGCA
LOC_Os09g15500
Os.28000.1.A1_x_at--1060--3412Chr09:9485593..9485617 (25 bp)
CAGTCGAGGGCCTCCGACGTGGTCC
LOC_Os09g15500
Os.28000.1.A1_x_at--309--4311NONE
CCTTCTTCCGCAAGCTCGGGCTGGG
NONE
Os.28000.1.A1_x_at--62--9551Chr09:9490920..9490939 (20 bp)
TCTTCCGCAAGCTCGGGCTGGGCGA
LOC_Os09g15510
Os.28000.1.A1_x_at--572--1591NONE
AGCTCGGGCTGGGCGAGTTCGACAC
NONE
Target Sequence 
TGCAGGGCATCGTCCGTGCACGCTTCGCCCGCGACGCCCCCATCGTCGCCTACCTCCTCCGCATGCAGTTCCACGAGTGC
GCCGTCAATGGGTGCGACGGCGGACTGCTGATCGACGGGCCAGGCACGGAGAAGACGGCGTCGCCGAACCTGAGCGTGAA
GGGGTACGACCTCATCGCCGACATCAAGGCGGAGCTGGAGAGGCGGTGCCCCGGCGTGGTGTCCTGCTCCGACATCCAGA
TCCTCGCCACCCGCGACGCCGTCGCGCTCGCCGGCGGGCAGCCGTACGCGGTGCGCACGGGGCGGAGGGACCGCCGCCAG
TCGAGGGCCTCCGACGTGGTCCTGCCGGCGCCGGACAGCACGGCGGCGCAGTCCGTCGCCTTCTTCCGCAAGCTCGGGCT
GGGCGAGTTCGACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28000.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis