Browse Element(s) Details


Os.56211.1.S1_at

Description gb:AK109621.1
DB_XREF= gi:32994830
TID=Os.56211.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56211 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-138-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-138-A06, full insert sequence.
FL= gb:AK109621.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1554011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15480Os.14294.1.S1_at11/119+9475481..9477841Ser/Thr-rich protein T10 in DGCR region, putative, expressed
LOC_Os09g15490NANA9+9482798..9483515hypothetical protein
LOC_Os09g15500OsAffx.29854.1.S1_x_at7/119+9485054..9486123Peroxidase family protein
LOC_Os09g15500OsAffx.29854.1.S1_at6/119+9485054..9486123Peroxidase family protein
LOC_Os09g15500Os.28000.1.A1_x_at4/119+9485054..9486123Peroxidase family protein
LOC_Os09g15510OsAffx.29854.1.S1_x_at11/119+9489520..9491543Peroxidase family protein, expressed
LOC_Os09g15510OsAffx.29854.1.S1_at11/119+9489520..9491543Peroxidase family protein, expressed
LOC_Os09g15510Os.28000.1.A1_x_at4/119+9489520..9491543Peroxidase family protein, expressed
LOC_Os09g15520Os.6617.1.S1_s_at11/119+9495345..9496052Oleosin family protein, expressed
LOC_Os09g15530OsAffx.29855.1.S1_at11/119+9496190..9497538hypothetical protein
LOC_Os09g15540Os.56211.1.S1_at11/119+9497903..9499492F-box domain containing protein, expressed
LOC_Os09g15540OsAffx.9167.1.S1_x_at1/119+9497903..9499492F-box domain containing protein, expressed
LOC_Os09g15550Os.56250.1.S1_at11/119+9500360..9501868F-box domain containing protein, expressed
LOC_Os09g15560Os.55706.1.S1_at11/119+9504693..9506076F-box domain containing protein, expressed
LOC_Os09g15570OsAffx.29856.1.S1_at11/119+9510313..9512124F-box domain containing protein, expressed
LOC_Os09g15580OsAffx.30126.2.S1_at11/119+9513235..9516346hypothetical protein
LOC_Os09g15580OsAffx.30126.2.S1_x_at10/119+9513235..9516346hypothetical protein
LOC_Os09g15580Os.16896.1.S1_at5/119+9513235..9516346hypothetical protein
LOC_Os09g15580Os.36979.1.S1_x_at3/119+9513235..9516346hypothetical protein
LOC_Os09g15590OsAffx.30125.1.S1_at11/119+9517483..9523582F-box domain containing protein, expressed
LOC_Os09g15590OsAffx.8513.1.S1_s_at1/119+9517483..9523582F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56211.1.S1_at--663--1931Chr09:9498897..9498921 (25 bp)
ACGGCAGAGTTCTCGCTGGTCACGA
LOC_Os09g15540
Os.56211.1.S1_at--670--4631Chr09:9498927..9498951 (25 bp)
GCGATCGTCGGAGAGTCATACCACC
LOC_Os09g15540
Os.56211.1.S1_at--420--491Chr09:9499011..9499035 (25 bp)
ATCGGCGACGACCTGAAAATCTTCA
LOC_Os09g15540
Os.56211.1.S1_at--773--8971Chr09:9499024..9499048 (25 bp)
TGAAAATCTTCACGCAGCTCAAGGG
LOC_Os09g15540
Os.56211.1.S1_at--556--3431Chr09:9499111..9499135 (25 bp)
CAGGGCACGACGTCGGGTTGTTCCA
LOC_Os09g15540
Os.56211.1.S1_at--453--7911Chr09:9499126..9499150 (25 bp)
GGTTGTTCCACCACTACGCAAGGAT
LOC_Os09g15540
Os.56211.1.S1_at--1159--8331Chr09:9499201..9499225 (25 bp)
GGCTGTTCTCCGTTGAGGTCGAGAC
LOC_Os09g15540
Os.56211.1.S1_at--1105--4911Chr09:9499311..9499335 (25 bp)
GCTTGCATTGCTGGGAGACGCCGCA
LOC_Os09g15540
Os.56211.1.S1_at--311--4751Chr09:9499348..9499372 (25 bp)
GCTGATATCTACATCTATGCGCGCA
LOC_Os09g15540
Os.56211.1.S1_at--1147--3691Chr09:9499362..9499386 (25 bp)
CTATGCGCGCAGAATCACAGTTTTT
LOC_Os09g15540
Os.56211.1.S1_at--706--7451Chr09:9499444..9499468 (25 bp)
GTGTCTCACAGCTTTATTACATCAA
LOC_Os09g15540
Target Sequence 
ACGGCAGAGTTCTCGCTGGTCACGATCCCGGCGATCGTCGGAGAGTCATACCACCCGTCAACCTTCCGTGTCATCGGTGG
CGGCGACGACGGCACGATGCGCGTGGTCCGCTTGATCGGCGACGACCTGAAAATCTTCACGCAGCTCAAGGGGAGCGGCG
GCGAGTGGGTGGTGGAGAAGCTCGTGAGGCTGCCGGTGGCGACCCGTGGGTTGCCAGGGCACGACGTCGGGTTGTTCCAC
CACTACGCAAGGATCGTCACGGCGAACGAGAGGTACATCCTCGTGACGCCACGGGTGGCGACGTGGCTGTTCTCCGTTGA
GGTCGAGACGCCGGTGGTTGAGCGCGAGCATGTGAGGAACAAGTACGCCGGCGCGGCCTACCCGTACGAGCTGCCATGGC
CACCGGTCTTGCAGGCTTGCATTGCTGGGAGACGCCGCAGCAGGAGATGATGCTGATATCTACATCTATGCGCGCAGAAT
CACAGTTTTTCTTCATCTCCGGCAAGGGTAATATCTTACATTTGTGAGTTGTGACCAATTTATTAAAGTGTCTCACAGCT
TTATTACATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56211.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis