Browse Element(s) Details


Os.14294.1.S1_at

Description gb:AK071737.1
DB_XREF= gi:32981760
TID=Os.14294.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14294 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023109A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023109A10, full insert sequence.
FL= gb:AK071737.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1548011/11Ser/Thr-rich protein T10 in DGCR region, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15440OsAffx.6284.1.S1_at11/119+9451832..9453103F-box domain containing protein
LOC_Os09g15450OsAffx.17716.1.S1_at11/119+9454103..9456977hypothetical protein
LOC_Os09g15460NANA9+9458301..9462945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g15470Os.27691.1.S1_x_at4/119+9464788..9470500retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g15480Os.14294.1.S1_at11/119+9475481..9477841Ser/Thr-rich protein T10 in DGCR region, putative, expressed
LOC_Os09g15490NANA9+9482798..9483515hypothetical protein
LOC_Os09g15500OsAffx.29854.1.S1_x_at7/119+9485054..9486123Peroxidase family protein
LOC_Os09g15500OsAffx.29854.1.S1_at6/119+9485054..9486123Peroxidase family protein
LOC_Os09g15500Os.28000.1.A1_x_at4/119+9485054..9486123Peroxidase family protein
LOC_Os09g15510OsAffx.29854.1.S1_x_at11/119+9489520..9491543Peroxidase family protein, expressed
LOC_Os09g15510OsAffx.29854.1.S1_at11/119+9489520..9491543Peroxidase family protein, expressed
LOC_Os09g15510Os.28000.1.A1_x_at4/119+9489520..9491543Peroxidase family protein, expressed
LOC_Os09g15520Os.6617.1.S1_s_at11/119+9495345..9496052Oleosin family protein, expressed
LOC_Os09g15530OsAffx.29855.1.S1_at11/119+9496190..9497538hypothetical protein
LOC_Os09g15540Os.56211.1.S1_at11/119+9497903..9499492F-box domain containing protein, expressed
LOC_Os09g15540OsAffx.9167.1.S1_x_at1/119+9497903..9499492F-box domain containing protein, expressed
LOC_Os09g15550Os.56250.1.S1_at11/119+9500360..9501868F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14294.1.S1_at--1003--651Chr09:9476739..9476763 (25 bp)
ATGCAAGGCTAGACAGCCCTTGGCA
LOC_Os09g15480
Os.14294.1.S1_at--1134--4031Chr09:9476218..9476242 (25 bp)
CGATTCGCCTCGGTAAGAACTTCAG
LOC_Os09g15480
Os.14294.1.S1_at--355--5691Chr09:9475835..9476058 (25 bp)
GACTGACCAGGGACTCTACGGGACA
LOC_Os09g15480
Os.14294.1.S1_at--840--10571Chr09:9475797..9475821 (25 bp)
TTCTATCAGTGAACTACGACGGTGA
LOC_Os09g15480
Os.14294.1.S1_at--279--1851Chr09:9475782..9475806 (25 bp)
ACGACGGTGAAGCTAGCTTGTACGA
LOC_Os09g15480
Os.14294.1.S1_at--474--6891Chr09:9475740..9475764 (25 bp)
GTATATGGAAGGATCACACGGTGCA
LOC_Os09g15480
Os.14294.1.S1_at--1049--7951Chr09:9475730..9475754 (25 bp)
GGATCACACGGTGCATTACCAGATA
LOC_Os09g15480
Os.14294.1.S1_at--1064--231Chr09:9475693..9475717 (25 bp)
ATATACTAATATGGGAGCCTCCAAT
LOC_Os09g15480
Os.14294.1.S1_at--537--9051Chr09:9475634..9475658 (25 bp)
TGCATGTAGTTATCTTCTTCACCCG
LOC_Os09g15480
Os.14294.1.S1_at--823--1151Chr09:9475627..9475651 (25 bp)
AGTTATCTTCTTCACCCGGTATATT
LOC_Os09g15480
Os.14294.1.S1_at--1029--5031Chr09:9475542..9475566 (25 bp)
GCAGATTGCTTATTCATCACATGGA
LOC_Os09g15480
Target Sequence 
ATGCAAGGCTAGACAGCCCTTGGCAGAANGCGATTCGCCTCGGTAAGAACTTCAGGGANCATCTTAGGAAGCATGGTGAT
GATGAGGTTGAAGCCAAGGACATAGTTGAGAGGCTAATGACTGACNCCNCAAAGGCTGACAAAGATAGGCTGCCNAACAN
CTGGCTGTGATCCAAACTGGGAGCNACGGCCTGAGCTCCATTNTTCATTGAGGTNCAGACTGACCAGGGACTCTACGGGA
CACNGGAGCACGGCCNGTTCTATCAGTGAACTACGACGGTGAAGCTAGCTTGTACGAGAAATACCTGGAGAGTGGTATAT
GGAAGGATCACACGGTGCATTACCAGATAGAGTAGGCGGTAATATACTAATATGGGAGCCTCCAATAAGAAAAGGATGAC
GAAATTAATAGCTACAATTGTGCATGTAGTTATCTTCTTCACCCGGTATATTGAAGATGAAGAAATGTACNATGATTCTC
TAATTACGCCGATTAAATTATATATACTGTATGCAGATTGCTTATTCATCACATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14294.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis