Browse Element(s) Details


OsAffx.6284.1.S1_at

Description tigr:9637.m01274
TID=OsAffx.6284.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1544011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15400NANA9+9430092..9431665Inositol monophosphatase - like protein, putative
LOC_Os09g15410NANA9+9433632..9434432retrotransposon protein, putative, unclassified
LOC_Os09g15420Os.50492.1.S1_at11/119+9436673..9441552UDP-glucose 4-epimerase GEPI48, putative, expressed
LOC_Os09g15430Os.6220.1.S1_at11/119+9444001..9448750zinc finger family protein, putative, expressed
LOC_Os09g15440OsAffx.6284.1.S1_at11/119+9451832..9453103F-box domain containing protein
LOC_Os09g15450OsAffx.17716.1.S1_at11/119+9454103..9456977hypothetical protein
LOC_Os09g15460NANA9+9458301..9462945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g15470Os.27691.1.S1_x_at4/119+9464788..9470500retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g15480Os.14294.1.S1_at11/119+9475481..9477841Ser/Thr-rich protein T10 in DGCR region, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6284.1.S1_at--767--4031Chr09:9452382..9452406 (25 bp)
CGTTCCACCGCATGAGCCTCATGGG
LOC_Os09g15440
OsAffx.6284.1.S1_at--458--8351Chr09:9452350..9452374 (25 bp)
GGCGGCTCGTGGTACTTCCACGAAG
LOC_Os09g15440
OsAffx.6284.1.S1_at--823--3631Chr09:9452336..9452360 (25 bp)
CTTCCACGAAGGGAGCACGATGGCC
LOC_Os09g15440
OsAffx.6284.1.S1_at--936--9191Chr09:9452250..9452274 (25 bp)
TCCATCCCGGCGTGTACCTGTACAT
LOC_Os09g15440
OsAffx.6284.1.S1_at--105--1671Chr09:9452205..9452229 (25 bp)
AGCCGCGCATGTTCACCACGACGGG
LOC_Os09g15440
OsAffx.6284.1.S1_at--776--8271Chr09:9452179..9452203 (25 bp)
GGCATCCTGACGGTGCTCATCAAGA
LOC_Os09g15440
OsAffx.6284.1.S1_at--120--4711Chr09:9452025..9452049 (25 bp)
GCGGCGGGCCAATGGATGTCATCAC
LOC_Os09g15440
OsAffx.6284.1.S1_at--259--10631Chr09:9451987..9452011 (25 bp)
TTCGTCGTCCTGTCACCGAGGATTA
LOC_Os09g15440
OsAffx.6284.1.S1_at--347--8731Chr09:9451977..9452001 (25 bp)
TGTCACCGAGGATTAGGACGACGAA
LOC_Os09g15440
OsAffx.6284.1.S1_at--573--8111Chr09:9451869..9451893 (25 bp)
GGACGATACAGTTCCCGTGTCAGCT
LOC_Os09g15440
OsAffx.6284.1.S1_at--1102--2131Chr09:9451862..9451886 (25 bp)
ACAGTTCCCGTGTCAGCTGCCATGG
LOC_Os09g15440
Target Sequence 
CGTTCCACCGCATGAGCCTCATGGGCCGCGCCGGCGGCTCGTGGTACTTCCACGAAGGGAGCACGATGGCCGTCCTCGAC
GGCAGCACGGCGGAGTTCTCGTCGTCGCCGTTCACGCTGCAACAACAACCCATCCATCCCGGCGTGTACCTGTACATCGC
CGAGGGCCGCGACGGCGAGCCGCGCATGTTCACCACGACGGGGGGCATCCTGACGGTGCTCATCAAGAGGGCGAGGAGGC
CGGCCGTCGTCGCCGGCGGCGAAGACGACGTCGAGGAGTGGGCGGTGGAGAAGAGCGTCCGGCTATCGGAGGCGACCCGC
GGGTTGCCGGGGTACGATGCGTCCTTCTTCGGCGGCGGCGGCGGGCCAATGGATGTCATCACGAGGGGCGTCGGGTTCGT
CGTCCTGTCACCGAGGATTAGGACGACGAAGGAGGAGGCTGCTGCACCTGCGCGGTGGTGGTTCGCCGTCGACCTGGAGA
CGGCAGAGGTGGAGAGGGTGCACGACGACTTGGGGACGATACAGTTCCCGTGTCAGCTGCCATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6284.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis