Browse Element(s) Details


Os.50492.1.S1_at

Description gb:AK063871.1
DB_XREF= gi:32973889
TID=Os.50492.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50492 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-122-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-E09, full insert sequence.
FL= gb:AK063871.1 gb:AK121426.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1542011/11UDP-glucose 4-epimerase GEPI48, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15390OsAffx.29851.1.S1_at11/119+9416888..9422872NB-ARC domain containing protein, expressed
LOC_Os09g15400NANA9+9430092..9431665Inositol monophosphatase - like protein, putative
LOC_Os09g15410NANA9+9433632..9434432retrotransposon protein, putative, unclassified
LOC_Os09g15420Os.50492.1.S1_at11/119+9436673..9441552UDP-glucose 4-epimerase GEPI48, putative, expressed
LOC_Os09g15430Os.6220.1.S1_at11/119+9444001..9448750zinc finger family protein, putative, expressed
LOC_Os09g15440OsAffx.6284.1.S1_at11/119+9451832..9453103F-box domain containing protein
LOC_Os09g15450OsAffx.17716.1.S1_at11/119+9454103..9456977hypothetical protein
LOC_Os09g15460NANA9+9458301..9462945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g15470Os.27691.1.S1_x_at4/119+9464788..9470500retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0010053biological_processroot epidermal cell differentiation
GO:0046369biological_processgalactose biosynthesis
GO:0005829cellular_componentcytosol
GO:0003978molecular_functionUDP-glucose 4-epimerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50492.1.S1_at--1017--1251Chr09:9437234..9437258 (25 bp)
AGATTCTCTTTTCGTCAGCTGCTAA
LOC_Os09g15420
Os.50492.1.S1_at--37--5951Chr09:9437052..9437076 (25 bp)
GAGCAAGAATCCTTTCGGGTACGCC
LOC_Os09g15420
Os.50492.1.S1_at--351--131Chr09:9436999..9437023 (25 bp)
ATTCACACTGATCAACGCCGATTGG
LOC_Os09g15420
Os.50492.1.S1_at--399--1831Chr09:9436985..9437009 (25 bp)
ACGCCGATTGGTCTGTGTGAACTCA
LOC_Os09g15420
Os.50492.1.S1_at--1093--10031Chr09:9436921..9436945 (25 bp)
TAGATCTAGTCGGTCAGTCATACAG
LOC_Os09g15420
Os.50492.1.S1_at--560--451Chr09:9436845..9436869 (25 bp)
ATCTACCCTTCTGCATATAGTTCAA
LOC_Os09g15420
Os.50492.1.S1_at--171--1171Chr09:9436797..9436821 (25 bp)
AGTCAGTCAGCTAATTCAATTCTTT
LOC_Os09g15420
Os.50492.1.S1_at--1032--3611Chr09:9436770..9436794 (25 bp)
CTTGCTAATTTAGTGGCATTGCCTT
LOC_Os09g15420
Os.50492.1.S1_at--33--8291Chr09:9436756..9436780 (25 bp)
GGCATTGCCTTGCACAGTACTTGAT
LOC_Os09g15420
Os.50492.1.S1_at--1026--5031Chr09:9436731..9436755 (25 bp)
GCAGATTCCTGCATCACCAAGAATG
LOC_Os09g15420
Os.50492.1.S1_at--532--5271Chr09:9436711..9436735 (25 bp)
GAATGCAGCTGTATACGGATTTTGT
LOC_Os09g15420
Target Sequence 
AGATTCTCTTTTCGTCAGCTGCTAAAGCAGAGAGAGAATTCAAGTGGAAGGCAAAATATGGCATCGAAGAAATGTGCAGA
GACCAATGGAACTGGGCGAGCAAGAATCCTTTCGGGTACGCCTCGCCCGACTCCACCAAGCAGAATGGTCATTCACACTG
ATCAACGCCGATTGGTCTGTGTGAACTCAGTTGTACATGCAACGTAGAACTACAGGTCGAGATCGATGTAGATCTAGTCG
GTCAGTCATACAGAGAAAGCTTAGAAAAGATTTGTTCTCTTCTTTTGGACCAGTATTGGTATAAATCTACCCTTCTGCAT
ATAGTTCAAAATTGTTGTAGGAACATTGCTATAGTCAGTCAGCTAATTCAATTCTTTTTCTTGCTAATTTAGTGGCATTG
CCTTGCACAGTACTTGATGCAGATTCCTGCATCACCAAGAATGCAGCTGTATACGGATTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50492.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis