Browse Element(s) Details


OsAffx.29851.1.S1_at

Description tigr:9637.m01267
TID=OsAffx.29851.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NBS-LRR type disease resistance protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1539011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15370NANA9+9398148..9401404expressed protein
LOC_Os09g15380OsAffx.5841.1.S1_at1/119+9404038..9409805retrotransposon protein, putative, unclassified
LOC_Os09g15390OsAffx.29851.1.S1_at11/119+9416888..9422872NB-ARC domain containing protein, expressed
LOC_Os09g15400NANA9+9430092..9431665Inositol monophosphatase - like protein, putative
LOC_Os09g15410NANA9+9433632..9434432retrotransposon protein, putative, unclassified
LOC_Os09g15420Os.50492.1.S1_at11/119+9436673..9441552UDP-glucose 4-epimerase GEPI48, putative, expressed
LOC_Os09g15430Os.6220.1.S1_at11/119+9444001..9448750zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0005622cellular_componentintracellular
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29851.1.S1_at--555--891Chr09:9421340..9421364 (25 bp)
AGGCGCTGAAGCACCGAATTATTGT
LOC_Os09g15390
OsAffx.29851.1.S1_at--102--2851Chr09:9421419..9421443 (25 bp)
AAGTGCTTCCGACTAAGTCCACATG
LOC_Os09g15390
OsAffx.29851.1.S1_at--553--1131Chr09:9421434..9421458 (25 bp)
AGTCCACATGATATGTTTCCCAGCC
LOC_Os09g15390
OsAffx.29851.1.S1_at--96--1691Chr09:9421455..9421479 (25 bp)
AGCCTCTCTGTTTTGAGGGTGTCCT
LOC_Os09g15390
OsAffx.29851.1.S1_at--285--8711Chr09:9421474..9421498 (25 bp)
TGTCCTTCTGCGACCGGCTAAAAAA
LOC_Os09g15390
OsAffx.29851.1.S1_at--822--2131Chr09:9421555..9421579 (25 bp)
ACAGTATCACGCAAGCCTTTGGGCA
LOC_Os09g15390
OsAffx.29851.1.S1_at--285--991Chr09:9421590..9421614 (25 bp)
AAGTCAACGGTTCCGACATTCCCAT
LOC_Os09g15390
OsAffx.29851.1.S1_at--904--4451Chr09:9421615..9421639 (25 bp)
GCCTACGGTATCTAAGCTTTGCATA
LOC_Os09g15390
OsAffx.29851.1.S1_at--877--10671Chr09:9421661..9421685 (25 bp)
TTGCGATTCTGATGTGACGTTCCCA
LOC_Os09g15390
OsAffx.29851.1.S1_at--945--8931Chr09:9421675..9421699 (25 bp)
TGACGTTCCCACAGTTAGAGACCCT
LOC_Os09g15390
OsAffx.29851.1.S1_at--275--7151Chr09:9421827..9421851 (25 bp)
GTCCTAGATTTGCTGGAACCCTATC
LOC_Os09g15390
Target Sequence 
AGGCGCTGAAGCACCGAATTATTGTTTCGAGGCTCTCAAGAAGATCGAGTTGTTTAATCTAAAAATGTTAAAACATATTA
AGTGCTTCCGACTAAGTCCACATGATATGTTTCCCAGCCTCTCTGTTTTGAGGGTGTCCTTCTGCGACCGGCTAAAAAAC
ATCTCTTGTACAATGTATTTGTCCAAACTTCAACATTTAGAGGTAAGTTACTGCAACAGTATCACGCAAGCCTTTGGGCA
CAACATGAACAAGTCAACGGTTCCGACATTCCCATGCCTACGGTATCTAAGCTTTGCATACCTGGATGGGTTGGAGAAGA
TTTGCGATTCTGATGTGACGTTCCCACAGTTAGAGACCCTGAAATTTACAGGTTGTCCAAATTTGATGAGCCTTCCATTC
AAAAAGGGAACAGTACCCCTGAATCTGAGGGAGCTACAATTGGAAGATGTGAAATTATGGAAAAACTTGATATGGGAAGA
AGAAGGTGTCCTAGATTTGCTGGAACCCTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29851.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis