Browse Element(s) Details


OsAffx.29855.1.S1_at

Description tigr:9637.m01284
TID=OsAffx.29855.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1553011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15480Os.14294.1.S1_at11/119+9475481..9477841Ser/Thr-rich protein T10 in DGCR region, putative, expressed
LOC_Os09g15490NANA9+9482798..9483515hypothetical protein
LOC_Os09g15500OsAffx.29854.1.S1_x_at7/119+9485054..9486123Peroxidase family protein
LOC_Os09g15500OsAffx.29854.1.S1_at6/119+9485054..9486123Peroxidase family protein
LOC_Os09g15500Os.28000.1.A1_x_at4/119+9485054..9486123Peroxidase family protein
LOC_Os09g15510OsAffx.29854.1.S1_x_at11/119+9489520..9491543Peroxidase family protein, expressed
LOC_Os09g15510OsAffx.29854.1.S1_at11/119+9489520..9491543Peroxidase family protein, expressed
LOC_Os09g15510Os.28000.1.A1_x_at4/119+9489520..9491543Peroxidase family protein, expressed
LOC_Os09g15520Os.6617.1.S1_s_at11/119+9495345..9496052Oleosin family protein, expressed
LOC_Os09g15530OsAffx.29855.1.S1_at11/119+9496190..9497538hypothetical protein
LOC_Os09g15540Os.56211.1.S1_at11/119+9497903..9499492F-box domain containing protein, expressed
LOC_Os09g15540OsAffx.9167.1.S1_x_at1/119+9497903..9499492F-box domain containing protein, expressed
LOC_Os09g15550Os.56250.1.S1_at11/119+9500360..9501868F-box domain containing protein, expressed
LOC_Os09g15560Os.55706.1.S1_at11/119+9504693..9506076F-box domain containing protein, expressed
LOC_Os09g15570OsAffx.29856.1.S1_at11/119+9510313..9512124F-box domain containing protein, expressed
LOC_Os09g15580OsAffx.30126.2.S1_at11/119+9513235..9516346hypothetical protein
LOC_Os09g15580OsAffx.30126.2.S1_x_at10/119+9513235..9516346hypothetical protein
LOC_Os09g15580Os.16896.1.S1_at5/119+9513235..9516346hypothetical protein
LOC_Os09g15580Os.36979.1.S1_x_at3/119+9513235..9516346hypothetical protein
LOC_Os09g15590OsAffx.30125.1.S1_at11/119+9517483..9523582F-box domain containing protein, expressed
LOC_Os09g15590OsAffx.8513.1.S1_s_at1/119+9517483..9523582F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29855.1.S1_at--1142--1891Chr09:9496919..9496943 (25 bp)
ACGTCCGCGTCAACATGTCGAGGTT
LOC_Os09g15530
OsAffx.29855.1.S1_at--30--2511Chr09:9496908..9496932 (25 bp)
AACATGTCGAGGTTCACCGTGATCT
LOC_Os09g15530
OsAffx.29855.1.S1_at--623--7891Chr09:9496898..9496922 (25 bp)
GGTTCACCGTGATCTGCGCGCTCTA
LOC_Os09g15530
OsAffx.29855.1.S1_at--49--8651Chr09:9496841..9496865 (25 bp)
TGGGCACCGCCATGGGCTACTCGTT
LOC_Os09g15530
OsAffx.29855.1.S1_at--830--4031Chr09:9496587..9496611 (25 bp)
CGTTCCATGTCGTCGATCACGGAGG
LOC_Os09g15530
OsAffx.29855.1.S1_at--528--7491Chr09:9496463..9496487 (25 bp)
GTGGGAGCTCCTGAATCGCGTCAGC
LOC_Os09g15530
OsAffx.29855.1.S1_at--724--5431Chr09:9496397..9496421 (25 bp)
GAACGACGACGATAGGTTCTCCTCC
LOC_Os09g15530
OsAffx.29855.1.S1_at--924--5891Chr09:9496275..9496299 (25 bp)
GAGCTCGACACCACGACGATAGAAC
LOC_Os09g15530
OsAffx.29855.1.S1_at--771--10011Chr09:9496256..9496280 (25 bp)
TAGAACGCAAGCACGCCATGGACGA
LOC_Os09g15530
OsAffx.29855.1.S1_at--1088--4311Chr09:9496241..9496265 (25 bp)
CCATGGACGAACACGTAGGTGGTTT
LOC_Os09g15530
OsAffx.29855.1.S1_at--748--7731Chr09:9496224..9496248 (25 bp)
GGTGGTTTGGTATACAAGCACGAGA
LOC_Os09g15530
Target Sequence 
ACGTCCGCGTCAACATGTCGAGGTTCACCGTGATCTGCGCGCTCTACGAGCGGTACGACGGCGGCGTGCCCGACGACGTG
GGCACCGCCATGGGCTACTCGTTCTGCCGGTTCTCGCTCGACGCCCTCCCGGCCGGCCTCCGGTGGTCGTCCTCGCCGCA
GCACGACGACGAGCCACCGTTCCATGTCGTCGATCACGGAGGCGAACCTTACCCGCCCTTCATTGACAGCCTCGCCGCGC
GCATCGTCGGCTTGTCCGGCGGCGAGCTCAGGGTGTTCTCGCGCTGGCGAGACGAGGACGGGTGGGAGCTCCTGAATCGC
GTCAGCTTGCCGGAGATCACCCGCGCGCCGCCGCCACATGCCGATCGGAACGACGACGATAGGTTCTCCTCCCTCTCCGG
CAACGGCGTCACCGCCATTCTTGCATGCCGGCGGCCGTGTTGGGCAAGTGGTCCTGTGGCCGGCGCAGGGGAGGTGGGTG
TTCACCGTCGAGCTCGACACCACGACGATAGAACGCAAGCACGCCATGGACGAACACGTAGGTGGTTTGGTATACAAGCA
CGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29855.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis