Browse Element(s) Details


Os.28096.1.S1_at

Description gb:AK060834.1
DB_XREF= gi:32970852
TID=Os.28096.1
CNT=44
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.28096 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-034-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-034-C08, full insert sequence.
FL= gb:AK060834.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4317011/11Calreticulin-3 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43110OsAffx.27289.1.S1_at11/115+24946588..24949630GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g43120OsAffx.15077.1.S1_at10/115+24953002..24955693GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g43130Os.9927.1.S1_at11/115+24958319..24960267Brix domain containing protein 1, putative, expressed
LOC_Os05g43140Os.49209.1.S1_at10/115+24961430..24962261expressed protein
LOC_Os05g43150OsAffx.25962.1.S1_at11/115+24963176..24968921transposon protein, putative, Mutator sub-class
LOC_Os05g43170Os.28096.1.S1_at11/115+24971502..24975853Calreticulin-3 precursor, putative, expressed
LOC_Os05g43170Os.18169.1.S1_at1/115+24971502..24975853Calreticulin-3 precursor, putative, expressed
LOC_Os05g43174Os.55242.1.S1_x_at11/115+24980177..24980799expressed protein
LOC_Os05g43174Os.51264.1.S1_x_at1/115+24980177..24980799expressed protein
LOC_Os05g43180OsAffx.15078.1.S1_at11/115+24988983..24989775hypothetical protein
LOC_Os05g43190OsAffx.15079.1.S1_at11/115+24994767..24995051hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28096.1.S1_at--288--3931Chr05:24974818..24974842 (25 bp)
CGGCACCGAGGCAGGGACCGTTACA
LOC_Os05g43170
Os.28096.1.S1_at--173--291Chr05:24975290..24975309 (20 bp)
ATAGAGGTCATCATCGTAGGTATGA
LOC_Os05g43170
Os.28096.1.S1_at--143--1031Chr05:24975302..24975427 (25 bp)
AGGTATGACTACCATGACGAGCTAT
LOC_Os05g43170
Os.28096.1.S1_at--685--1731Chr05:24975418..24975437 (20 bp)
ACCATGACGAGCTATGAGGTCTCCA
LOC_Os05g43170
Os.28096.1.S1_at--503--8891Chr05:24975427..24975451 (25 bp)
TGAGGTCTCCAGATTATCCCATTCT
LOC_Os05g43170
Os.28096.1.S1_at--593--531Chr05:24975442..24975466 (25 bp)
ATCCCATTCTTTCAAGGAACTTCAG
LOC_Os05g43170
Os.28096.1.S1_at--159--951Chr05:24975465..24975489 (25 bp)
AGGAAGTTAGTGTTGCCCATCGACT
LOC_Os05g43170
Os.28096.1.S1_at--140--3531Chr05:24975482..24975506 (25 bp)
CATCGACTATTTCATCACCCAATTG
LOC_Os05g43170
Os.28096.1.S1_at--447--391Chr05:24975495..24975519 (25 bp)
ATCACCCAATTGATGATTGTACCAA
LOC_Os05g43170
Os.28096.1.S1_at--652--1431Chr05:24975526..24975550 (25 bp)
AGAACATGTTATTTCGAGGACAGAA
LOC_Os05g43170
Os.28096.1.S1_at--852--6331Chr05:24975595..24975619 (25 bp)
GATGCTGTTCACCTGAAACCAAGTA
LOC_Os05g43170
Target Sequence 
CGGCACCGAGGCAGGGACCGTTACAGGGATAGATATAGAGGTCATCATCGTAGGTATGACTACCATGACGAGCTATGAGG
TCTCCAGATTATCCCATTCTTTCAAGGAACTTCAGGAAGTTAGTGTTGCCCATCGACTATTTCATCACCCAATTGATGAT
TGTACCAATAAAATAGAACATGTTATTTCGAGGACAGAACAAAGCTTTATTTCAGGTGTGGATAGCACACTACAACACGA
ACTGATGCTGTTCACCTGAAACCAAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28096.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis