Browse Element(s) Details


Os.9927.1.S1_at

Description gb:AK106697.1
DB_XREF= gi:32991906
TID=Os.9927.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9927 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-D09, full insert sequence.
FL= gb:AK106697.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4313011/11Brix domain containing protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43070OsAffx.4602.1.S1_at10/115+24932262..24937267hypothetical protein
LOC_Os05g43070OsAffx.27287.1.S1_at10/115+24932262..24937267hypothetical protein
LOC_Os05g43070Os.41554.1.S1_at1/115+24932262..24937267hypothetical protein
LOC_Os05g43080OsAffx.27288.1.S1_x_at11/115+24938947..24939275hypothetical protein
LOC_Os05g43090OsAffx.4603.1.S1_at11/115+24939517..24940801GDSL-like Lipase/Acylhydrolase family protein
LOC_Os05g43100OsAffx.15076.1.S1_at11/115+24941929..24944024GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g43100OsAffx.2812.1.S1_at1/115+24941929..24944024GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g43110OsAffx.27289.1.S1_at11/115+24946588..24949630GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g43120OsAffx.15077.1.S1_at10/115+24953002..24955693GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g43130Os.9927.1.S1_at11/115+24958319..24960267Brix domain containing protein 1, putative, expressed
LOC_Os05g43140Os.49209.1.S1_at10/115+24961430..24962261expressed protein
LOC_Os05g43150OsAffx.25962.1.S1_at11/115+24963176..24968921transposon protein, putative, Mutator sub-class
LOC_Os05g43170Os.28096.1.S1_at11/115+24971502..24975853Calreticulin-3 precursor, putative, expressed
LOC_Os05g43170Os.18169.1.S1_at1/115+24971502..24975853Calreticulin-3 precursor, putative, expressed
LOC_Os05g43174Os.55242.1.S1_x_at11/115+24980177..24980799expressed protein
LOC_Os05g43174Os.51264.1.S1_x_at1/115+24980177..24980799expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9927.1.S1_at--817--5811Chr05:24959056..24959080 (25 bp)
GACCTAGTAGTTAGGCGGCACCGAT
LOC_Os05g43130
Os.9927.1.S1_at--247--3951Chr05:24959041..24959065 (25 bp)
CGGCACCGATATCCAGCTGAAAGTT
LOC_Os05g43130
Os.9927.1.S1_at--572--4111Chr05:24958784..24958808 (25 bp)
CGAAGGATCCTGTGCAGGGCAAGTT
LOC_Os05g43130
Os.9927.1.S1_at--275--2691Chr05:24958531..24958555 (25 bp)
AAGCTGAAGGCTATTCATTTTTTGT
LOC_Os05g43130
Os.9927.1.S1_at--180--5611Chr05:24958505..24958529 (25 bp)
GACAATTGGCCAGGTCAGATTAAAG
LOC_Os05g43130
Os.9927.1.S1_at--665--7051Chr05:24958469..24958493 (25 bp)
GTAACTGCTCCAACTCTTGCGTTAA
LOC_Os05g43130
Os.9927.1.S1_at--292--8191Chr05:24958438..24958462 (25 bp)
GGAAGTCACCTTGCTGTTAGATTGA
LOC_Os05g43130
Os.9927.1.S1_at--653--6651Chr05:24958402..24958426 (25 bp)
GTTGAGTACCATATAACCATCCTCT
LOC_Os05g43130
Os.9927.1.S1_at--760--351Chr05:24958390..24958414 (25 bp)
ATAACCATCCTCTAGTTTTTGCCTT
LOC_Os05g43130
Os.9927.1.S1_at--191--6811Chr05:24958376..24958400 (25 bp)
GTTTTTGCCTTTGTAATGAATTCCA
LOC_Os05g43130
Os.9927.1.S1_at--1018--3171Chr05:24958348..24958372 (25 bp)
CAATATTGAGCATGCTGGACTTAAC
LOC_Os05g43130
Target Sequence 
GACCTAGTAGTTAGGCGGCACCGATATCCAGCTGAAAGTTTGAAGAAGGAAGCAATGAAGACTGCCGATCATGCTAAGAA
GATGAAAAATGTCACGAAGGATCCTGTGCAGGGCAAGTTGGGCAAGGTCTACATTCCAGACCAGCAGATTGCAAAGATGT
CTTTATCAAACGACATCAAGGGGCTCAAGAGGGAGCGCCGTGAGGCCAAGAAAAACAAGGAGCACACGANGAAGCAAAAG
ATAANCGTTGAGTNAAGAAAGCTGAAGGCTATTCATTTTTTGTTGACAATTGGCCAGGTCAGATTAAAGGGTTCTGTGGG
GTAACTGCTCCAACTCTTGCGTTAACCATGGGGAAGTCACCTTGCTGTTAGATTGAGTGGTATATTAGTTGAGTACCATA
TAACCATCCTCTAGTTTTTGCCTTTGTAATGAATTCCACAACAATATTGAGCATGCTGGACTTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9927.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis