Browse Element(s) Details


Os.41554.1.S1_at

Description gb:NM_192327.1
DB_XREF= gi:34911737
GEN=P0707D10.33
TID=Os.41554.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41554 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0707D10.33 (P0707D10.33), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0707D10.33 (P0707D10.33), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g430701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43040Os.2245.1.S1_at11/115+24914112..24916352beta-9 tubulin, putative, expressed
LOC_Os05g43050OsAffx.15075.1.S1_at11/115+24917080..24918281hypothetical protein
LOC_Os05g43050Os.4009.1.S1_at1/115+24917080..24918281hypothetical protein
LOC_Os05g43060Os.26435.1.A1_at11/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43060Os.26381.3.S1_x_at11/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43060OsAffx.4601.1.S1_x_at9/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43060OsAffx.4601.1.S1_at1/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43070OsAffx.4602.1.S1_at10/115+24932262..24937267hypothetical protein
LOC_Os05g43070OsAffx.27287.1.S1_at10/115+24932262..24937267hypothetical protein
LOC_Os05g43070Os.41554.1.S1_at1/115+24932262..24937267hypothetical protein
LOC_Os05g43080OsAffx.27288.1.S1_x_at11/115+24938947..24939275hypothetical protein
LOC_Os05g43090OsAffx.4603.1.S1_at11/115+24939517..24940801GDSL-like Lipase/Acylhydrolase family protein
LOC_Os05g43100OsAffx.15076.1.S1_at11/115+24941929..24944024GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g43100OsAffx.2812.1.S1_at1/115+24941929..24944024GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g43110OsAffx.27289.1.S1_at11/115+24946588..24949630GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g43120OsAffx.15077.1.S1_at10/115+24953002..24955693GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g43130Os.9927.1.S1_at11/115+24958319..24960267Brix domain containing protein 1, putative, expressed
LOC_Os05g43140Os.49209.1.S1_at10/115+24961430..24962261expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41554.1.S1_at--874--9931Chr01:26386656..26386680 (25 bp)
TACGAGAATTGTGGGTCGGCCTCAT
NONE
Os.41554.1.S1_at--399--9631Chr01:26386635..26386659 (25 bp)
TCATGTGATTCTTGCCGGTGTCGTC
NONE
Os.41554.1.S1_at--307--8351Chr01:26386544..26386620 (25 bp)
GGCGCGACGAGGATTCGACCCAGTT
NONE
Os.41554.1.S1_at--1057--6711Chr01:26386522..26386546 (25 bp)
GTTCTGCGAGTGAAACAGCCAGTTT
NONE
Os.41554.1.S1_at--423--1211Chr01:26386502..26386526 (25 bp)
AGTTTTATCCAGCAATCGGCCGAGG
NONE
Os.41554.1.S1_at--418--10191Chr01:26386412..26386436 (25 bp)
TATTTTCGTGGAGCACTAACCCCTA
NONE
Os.41554.1.S1_at--153--5932Chr05:24937026..24937051 (24 bp)
GAGCACTAACCCCTAAACAATTTCT
LOC_Os05g43070
Os.41554.1.S1_at--470--10471NONE
TTACTCCTTAACGATGCACCTCGTA
NONE
Os.41554.1.S1_at--835--1751Chr01:26384343..26384367 (25 bp)
ACCTCGTACTGAACTGTGCGCGGGA
NONE
Os.41554.1.S1_at--303--1611Chr01:26384314..26384338 (25 bp)
AGCTGCAGCAACCAACCGAAAGAGA
NONE
Os.41554.1.S1_at--870--1411Chr01:26384163..26384187 (25 bp)
AGACACAGTTGCAAGCGCAGCCTTG
NONE
Target Sequence 
TACGAGAATTGTGGGTCGGCCTCATGTGATTCTTGCCGGTGTCGTCGCTGGGTCGACGTCGGCGCGACGAGGATTCGACC
CAGTTCTGCGAGTGAAACAGCCAGTTTTATCCAGCAATCGGCCGAGGAAGAAGGAAGTTCATATGGCAACGTGGATATTT
TTCTTTTGAAAAATTCCATTTTACCCCCGAACTATTTTCGTGGAGCACTAACCCCTAAACAATTTCTCTGTTCATTTATC
GACAGAACTATTGAAAACGATTCACGTTACTCCTTAACGATGCACCTCGTACTGAACTGTGCGCGGGACAGCAGCTGCAG
CAACCAACCGAAAGAGACTCCCAGCAGTCCCCCCCCCCCCCCCCCCCCCCCAATGTACACGACTCACGCAGCCCAGACAC
AGTTGCAAGCGCAGCCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41554.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis