Browse Element(s) Details


Os.2245.1.S1_at

Description gb:AK122090.1
DB_XREF= gi:37991736
TID=Os.2245.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.2245 (NCBI UniGene Cluster)
UG_TITLE=Unknown mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033123O20, full insert sequence.
FL= gb:AK122090.1 gb:AK098900.1 gb:AK062012.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4304011/11beta-9 tubulin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g42990OsAffx.10222.1.S1_x_at1/115+24889464..24891503retrotransposon protein, putative, unclassified
LOC_Os05g42990OsAffx.22094.1.S1_at1/115+24889464..24891503retrotransposon protein, putative, unclassified
LOC_Os05g42990OsAffx.727.1.S1_x_at1/115+24889464..24891503retrotransposon protein, putative, unclassified
LOC_Os05g43000NANA5+24892300..24895083retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g43010NANA5+24895726..24898395retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g43020OsAffx.21897.5.S1_x_at4/115+24898712..24901653retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g43030Os.54570.1.S1_at11/115+24903821..24906332expressed protein
LOC_Os05g43040Os.2245.1.S1_at11/115+24914112..24916352beta-9 tubulin, putative, expressed
LOC_Os05g43050OsAffx.15075.1.S1_at11/115+24917080..24918281hypothetical protein
LOC_Os05g43050Os.4009.1.S1_at1/115+24917080..24918281hypothetical protein
LOC_Os05g43060Os.26435.1.A1_at11/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43060Os.26381.3.S1_x_at11/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43060OsAffx.4601.1.S1_x_at9/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43060OsAffx.4601.1.S1_at1/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43070OsAffx.4602.1.S1_at10/115+24932262..24937267hypothetical protein
LOC_Os05g43070OsAffx.27287.1.S1_at10/115+24932262..24937267hypothetical protein
LOC_Os05g43070Os.41554.1.S1_at1/115+24932262..24937267hypothetical protein
LOC_Os05g43080OsAffx.27288.1.S1_x_at11/115+24938947..24939275hypothetical protein
LOC_Os05g43090OsAffx.4603.1.S1_at11/115+24939517..24940801GDSL-like Lipase/Acylhydrolase family protein

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Gene Ontology Classification
GO idTypeName
GO:0009556biological_processmicrosporogenesis
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2245.1.S1_at--722--6631Chr05:24915825..24915849 (25 bp)
GTTGTGCTACGCAGAATCTCCGGAT
LOC_Os05g43040
Os.2245.1.S1_at--754--7491Chr05:24915864..24915888 (25 bp)
GTGGTAGCCCGAGCTAAGCAGCTTC
LOC_Os05g43040
Os.2245.1.S1_at--334--4331Chr05:24915890..24915914 (25 bp)
CCATGAACTTGAGCCGGTGACGCAT
LOC_Os05g43040
Os.2245.1.S1_at--993--7751Chr05:24915905..24915929 (25 bp)
GGTGACGCATGTTACGTCGCCAAAT
LOC_Os05g43040
Os.2245.1.S1_at--175--1911Chr05:24915918..24915942 (25 bp)
ACGTCGCCAAATAATGCTGGGCTGA
LOC_Os05g43040
Os.2245.1.S1_at--1017--5971Chr05:24915965..24915989 (25 bp)
GAGACTAGACCTTGTGTTGAACGAA
LOC_Os05g43040
Os.2245.1.S1_at--823--8031Chr05:24916028..24916052 (25 bp)
GGAGATAGCTACCTTAAGGGACCAA
LOC_Os05g43040
Os.2245.1.S1_at--1090--771Chr05:24916100..24916124 (25 bp)
ATGTGCATACGGGTGCGTTGCCTTA
LOC_Os05g43040
Os.2245.1.S1_at--231--7791Chr05:24916111..24916135 (25 bp)
GGTGCGTTGCCTTAGAAATTCATGT
LOC_Os05g43040
Os.2245.1.S1_at--258--7151Chr05:24916256..24916280 (25 bp)
GTCTTCATGTTCTATGATGCTTATA
LOC_Os05g43040
Os.2245.1.S1_at--788--7031Chr05:24916321..24916345 (25 bp)
GTACACTTCACTTGGCTTGTTGGAA
LOC_Os05g43040
Target Sequence 
GTTGTGCTACGCAGAATCTCCGGATCGGAAGATGANAAGGTGGTAGCCCGAGCTAAGCAGCTTCTCCATGAACTTGAGCC
GGTGACGCATGTTACGTCGCCAAATAATGCTGGGCTGAGTGTCAGTGAAGAGATCATGGAGAGACTAGACCTTGTGTTGA
ACGAATGGACGCCGTTCAGGTCAAGGAGGCTGCCGGTATTTGAGGAGATAGCTACCTTAAGGGACCAAATTGCTTGTTGA
TCCCTTTATTCGCAAGGTTTTTGTTCTTTTGCTTAATGTGCATACGGGTGCGTTGCCTTAGAAATTCATGTGCATATGTA
GAGGCTGTTGTGGGCTTGTGGCAGTGCGAGTAATGGAGTAAAGGTTGTGATGTTCNGATAGATATCATATAGCTAGAGAT
CATGCAAAGCATCCAAGGAATAGTGTATTTTGTCTTCATGTTCTATGATGCTTATAATGNGTTGTAAACATTCTACAGAC
TACAAGAAATCCAAGTGTACACTTCACTTGGCTTGTTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2245.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis