Browse Element(s) Details


Os.54570.1.S1_at

Description gb:AK106936.1
DB_XREF= gi:32992145
TID=Os.54570.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54570 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-119-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-C09, full insert sequence.
FL= gb:AK105820.1 gb:AK106936.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4303011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g42980NANA5+24886737..24887252hypothetical protein
LOC_Os05g42990OsAffx.10222.1.S1_x_at1/115+24889464..24891503retrotransposon protein, putative, unclassified
LOC_Os05g42990OsAffx.22094.1.S1_at1/115+24889464..24891503retrotransposon protein, putative, unclassified
LOC_Os05g42990OsAffx.727.1.S1_x_at1/115+24889464..24891503retrotransposon protein, putative, unclassified
LOC_Os05g43000NANA5+24892300..24895083retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g43010NANA5+24895726..24898395retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g43020OsAffx.21897.5.S1_x_at4/115+24898712..24901653retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g43030Os.54570.1.S1_at11/115+24903821..24906332expressed protein
LOC_Os05g43040Os.2245.1.S1_at11/115+24914112..24916352beta-9 tubulin, putative, expressed
LOC_Os05g43050OsAffx.15075.1.S1_at11/115+24917080..24918281hypothetical protein
LOC_Os05g43050Os.4009.1.S1_at1/115+24917080..24918281hypothetical protein
LOC_Os05g43060Os.26435.1.A1_at11/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43060Os.26381.3.S1_x_at11/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43060OsAffx.4601.1.S1_x_at9/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43060OsAffx.4601.1.S1_at1/115+24923430..24931669KOW motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54570.1.S1_at--147--10211Chr05:24904397..24904421 (25 bp)
TATTCAACTCAGTTCGTGTGTGTGT
LOC_Os05g43030
Os.54570.1.S1_at--157--6651Chr05:24904354..24904378 (25 bp)
GTTGTTTTGCAATTTCACTGCATCA
LOC_Os05g43030
Os.54570.1.S1_at--581--471Chr05:24904273..24904297 (25 bp)
ATCTGCACTGCATGGTATGACGCAT
LOC_Os05g43030
Os.54570.1.S1_at--919--8931Chr05:24904256..24904280 (25 bp)
TGACGCATGAATCATCTGAAGCGAT
LOC_Os05g43030
Os.54570.1.S1_at--282--9811Chr05:24904180..24904204 (25 bp)
TAACTGGGAGAAGTATGGTCGGCTT
LOC_Os05g43030
Os.54570.1.S1_at--222--3771Chr05:24904141..24904165 (25 bp)
CTCTGCGTGGTGCTTTTCCTTTTTT
LOC_Os05g43030
Os.54570.1.S1_at--727--5371Chr05:24904014..24904038 (25 bp)
GAAGAAGCCAGCTTAGCATTGCTTA
LOC_Os05g43030
Os.54570.1.S1_at--161--4951Chr05:24903999..24904023 (25 bp)
GCATTGCTTATTGATCAGCAGGCAC
LOC_Os05g43030
Os.54570.1.S1_at--1016--6111Chr05:24903876..24903900 (25 bp)
GAGGGTGAACACTGCTAGTACTTTA
LOC_Os05g43030
Os.54570.1.S1_at--232--4871Chr05:24903863..24903887 (25 bp)
GCTAGTACTTTATTCGACTACAAAT
LOC_Os05g43030
Os.54570.1.S1_at--355--791Chr05:24903838..24903862 (25 bp)
ATGTGATTACAATATTCCTCAAGAA
LOC_Os05g43030
Target Sequence 
TATTCAACTCAGTTCGTGTGTGTGTGTGTGTGAACAATTCATTGTTGTTTTGCAATTTCACTGCATCAAATGTTACTATT
CATCAAAAGTGAAATTCCTCAACAAAAAAAAAAGAGAAAAAAAAATCTGCACTGCATGGTATGACGCATGAATCATCTGA
AGCGATAGGGGAAAGCAAAAGAGGAGCAGGAAATGAGAGAAGCAGGGAAACTAAAGCTAACTGGGAGAAGTATGGTCGGC
TTGTGTTTGTGTGTGTCTCTGCGTGGTGCTTTTCCTTTTTTTACTTCTTTTGTTGCAGGGGTGCTATTTTTTTGAAGTAA
CCGAGGAGCAGCAAGAAAAAGAATACAAAAGAAAAGAAACATGTTGCTGTATGAGTGAAGTGTGAAGAAGCCAGCTTAGC
ATTGCTTATTGATCAGCAGGCACAGAAGAAAAGGGAAAATGTTGCTAATTTCTCAACAAACATAAGAAGTGTGAAAAATT
GATATTTTTTTTTCAGACTTGTAGTAATTTGCTAAAATTTTGAGGGTGAACACTGCTAGTACTTTATTCGACTACAAATA
TGTGATTACAATATTCCTCAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54570.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis