Browse Element(s) Details


Os.26381.3.S1_x_at

Description gb:AK064413.1
DB_XREF= gi:32974431
TID=Os.26381.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26381 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0434A03.5 (P0434A03.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-A09, full insert sequence.
FL= gb:AK064413.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4306011/11KOW motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43020OsAffx.21897.5.S1_x_at4/115+24898712..24901653retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g43030Os.54570.1.S1_at11/115+24903821..24906332expressed protein
LOC_Os05g43040Os.2245.1.S1_at11/115+24914112..24916352beta-9 tubulin, putative, expressed
LOC_Os05g43050OsAffx.15075.1.S1_at11/115+24917080..24918281hypothetical protein
LOC_Os05g43050Os.4009.1.S1_at1/115+24917080..24918281hypothetical protein
LOC_Os05g43060Os.26435.1.A1_at11/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43060Os.26381.3.S1_x_at11/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43060OsAffx.4601.1.S1_x_at9/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43060OsAffx.4601.1.S1_at1/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43070OsAffx.4602.1.S1_at10/115+24932262..24937267hypothetical protein
LOC_Os05g43070OsAffx.27287.1.S1_at10/115+24932262..24937267hypothetical protein
LOC_Os05g43070Os.41554.1.S1_at1/115+24932262..24937267hypothetical protein
LOC_Os05g43080OsAffx.27288.1.S1_x_at11/115+24938947..24939275hypothetical protein
LOC_Os05g43090OsAffx.4603.1.S1_at11/115+24939517..24940801GDSL-like Lipase/Acylhydrolase family protein
LOC_Os05g43100OsAffx.15076.1.S1_at11/115+24941929..24944024GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g43100OsAffx.2812.1.S1_at1/115+24941929..24944024GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g43110OsAffx.27289.1.S1_at11/115+24946588..24949630GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g43120OsAffx.15077.1.S1_at10/115+24953002..24955693GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006306biological_processDNA methylation
GO:0006333biological_processchromatin assembly or disassembly
GO:0006350biological_processtranscription
GO:0006352biological_processtranscription initiation
GO:0035194biological_processRNA-mediated posttranscriptional gene silencing
GO:0005634cellular_componentnucleus
GO:0030880cellular_componentRNA polymerase complex
GO:0000166molecular_functionnucleotide binding
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0003899molecular_functionDNA-directed RNA polymerase activity
GO:0016986molecular_functiontranscription initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26381.3.S1_x_at--825--2391Chr05:24928310..24928334 (25 bp)
AAACAAAGCCACAGCACTGGAGGAT
LOC_Os05g43060
Os.26381.3.S1_x_at--389--4771Chr05:24928343..24928367 (25 bp)
GCTGCTGCCAACCTGAATGAATCAT
LOC_Os05g43060
Os.26381.3.S1_x_at--841--7511Chr05:24928373..24928397 (25 bp)
GTGGATGCACATAAGGACTCATGGG
LOC_Os05g43060
Os.26381.3.S1_x_at--23--1631Chr05:24928462..24928486 (25 bp)
AGCTGGACCACTAGACAAAGTTTGT
LOC_Os05g43060
Os.26381.3.S1_x_at--378--7851Chr05:24928499..24928523 (25 bp)
GGTAGTCCAAAGTTTTCCAGTGGTG
LOC_Os05g43060
Os.26381.3.S1_x_at--305--10391Chr05:24928511..24928535 (25 bp)
TTTTCCAGTGGTGATGGTCCATCCA
LOC_Os05g43060
Os.26381.3.S1_x_at--407--7391Chr05:24928521..24928545 (25 bp)
GTGATGGTCCATCCAGCTGGAACAA
LOC_Os05g43060
Os.26381.3.S1_x_at--887--6171Chr05:24928560..24928584 (25 bp)
GAGGAGATTCTCAAAACGGCAGCTG
LOC_Os05g43060
Os.26381.3.S1_x_at--251--2391Chr05:24928573..24928597 (25 bp)
AAACGGCAGCTGGAGCAGACCTGGT
LOC_Os05g43060
Os.26381.3.S1_x_at--734--5371Chr05:24928696..24928720 (25 bp)
GAAGAACTCAGGGACTAGTGACAGT
LOC_Os05g43060
Os.26381.3.S1_x_at--868--7351Chr05:24928713..24928737 (25 bp)
GTGACAGTTCTGGAAGGCCCTCTTG
LOC_Os05g43060
Target Sequence 
AAACAAAGCCACAGCACTGGAGGATGGGATGCTGCTGCTGCCAACCTGAATGAATCATCTGATGTGGATGCACATAAGGA
CTCATGGGGCAAAGCAAAAGATACAACAGCTAATGCTGAAGAAAAAAATAATGAAAGTGGAAACTGGAACAAAGCTGGAC
CACTAGACAAAGTTTGTGGCAGTGATTGGGGTAGTCCAAAGTTTTCCAGTGGTGATGGTCCATCCAGCTGGAACAAGGGA
GACAAAATTGGAGGAGATTCTCAAAACGGCAGCTGGAGCAGACCTGGTGGAAACTTTGAAGGTGGTCGTGGGTTTGGGCG
AGGACGGGGCAGAGGCAGGGGCCGAGAATCTGGGGATTACGGTGGCAGAAATGACCAAGGAAGCTGGAAGAACTCAGGGA
CTAGTGACAGTTCTGGAAGGCCCTCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26381.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis