Browse Element(s) Details


OsAffx.27288.1.S1_x_at

Description tigr:9633.m04002
TID=OsAffx.27288.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4308011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43040Os.2245.1.S1_at11/115+24914112..24916352beta-9 tubulin, putative, expressed
LOC_Os05g43050OsAffx.15075.1.S1_at11/115+24917080..24918281hypothetical protein
LOC_Os05g43050Os.4009.1.S1_at1/115+24917080..24918281hypothetical protein
LOC_Os05g43060Os.26435.1.A1_at11/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43060Os.26381.3.S1_x_at11/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43060OsAffx.4601.1.S1_x_at9/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43060OsAffx.4601.1.S1_at1/115+24923430..24931669KOW motif family protein, expressed
LOC_Os05g43070OsAffx.4602.1.S1_at10/115+24932262..24937267hypothetical protein
LOC_Os05g43070OsAffx.27287.1.S1_at10/115+24932262..24937267hypothetical protein
LOC_Os05g43070Os.41554.1.S1_at1/115+24932262..24937267hypothetical protein
LOC_Os05g43080OsAffx.27288.1.S1_x_at11/115+24938947..24939275hypothetical protein
LOC_Os05g43090OsAffx.4603.1.S1_at11/115+24939517..24940801GDSL-like Lipase/Acylhydrolase family protein
LOC_Os05g43100OsAffx.15076.1.S1_at11/115+24941929..24944024GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g43100OsAffx.2812.1.S1_at1/115+24941929..24944024GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g43110OsAffx.27289.1.S1_at11/115+24946588..24949630GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g43120OsAffx.15077.1.S1_at10/115+24953002..24955693GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g43130Os.9927.1.S1_at11/115+24958319..24960267Brix domain containing protein 1, putative, expressed
LOC_Os05g43140Os.49209.1.S1_at10/115+24961430..24962261expressed protein
LOC_Os05g43150OsAffx.25962.1.S1_at11/115+24963176..24968921transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27288.1.S1_x_at--455--2571Chr05:24939084..24939108 (25 bp)
AACTGGAACGGCAACGCCATCTGCG
LOC_Os05g43080
OsAffx.27288.1.S1_x_at--956--1931Chr05:24939077..24939101 (25 bp)
ACGGCAACGCCATCTGCGGCATGGC
LOC_Os05g43080
OsAffx.27288.1.S1_x_at--1054--8391Chr05:24939051..24939075 (25 bp)
GGCGCGGTCGCGTGCGAGGACCCGT
LOC_Os05g43080
OsAffx.27288.1.S1_x_at--126--9291Chr05:24939021..24939045 (25 bp)
TCCGTGCACTGGGACGGTGGTCACT
LOC_Os05g43080
OsAffx.27288.1.S1_x_at--384--4251Chr05:24939020..24939044 (25 bp)
CCGTGCACTGGGACGGTGGTCACTA
LOC_Os05g43080
OsAffx.27288.1.S1_x_at--244--9031Chr05:24939017..24939041 (25 bp)
TGCACTGGGACGGTGGTCACTACAC
LOC_Os05g43080
OsAffx.27288.1.S1_x_at--780--5091Chr05:24939016..24939040 (25 bp)
GCACTGGGACGGTGGTCACTACACG
LOC_Os05g43080
OsAffx.27288.1.S1_x_at--222--3331Chr05:24939015..24939039 (25 bp)
CACTGGGACGGTGGTCACTACACGG
LOC_Os05g43080
OsAffx.27288.1.S1_x_at--233--1931Chr05:24939014..24939038 (25 bp)
ACTGGGACGGTGGTCACTACACGGA
LOC_Os05g43080
OsAffx.27288.1.S1_x_at--414--1931Chr05:24938994..24939018 (25 bp)
ACGGAGGCCATCTACCGCTACATCG
LOC_Os05g43080
OsAffx.27288.1.S1_x_at--379--451Chr05:24938985..24939009 (25 bp)
ATCTACCGCTACATCGCCAAGGGGT
LOC_Os05g43080
Target Sequence 
AACTGGAACGGCAACGCCATCTGCGGCATGGCGGGCGCGGTCGCGTGCGAGGACCCGTCGGCGTCCGTGCACTGGGACGG
TGGTCACTACACGGAGGCCATCTACCGCTACATCGCCAAGGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27288.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis