Browse Element(s) Details


Os.28112.1.S1_at

Description gb:AK070047.1
DB_XREF= gi:32980071
TID=Os.28112.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28112 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) beta Galactosidase-like protein (P0431G06.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023038J20, full insert sequence.
FL= gb:AK067525.1 gb:AK070047.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7234011/11Glycosyl hydrolases family 2, immunoglobulin-like beta-sandwich domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72320Os.6169.1.S1_at11/111+42252446..42258451zinc finger protein, putative, expressed
LOC_Os01g72330Os.15908.1.S1_s_at11/111+42275801..42279237Two-component response regulator ARR8, putative, expressed
LOC_Os01g72340Os.28112.1.S1_at11/111+42281527..42289634Glycosyl hydrolases family 2, immunoglobulin-like beta-sandwich domain containing protein, expressed
LOC_Os01g72350Os.32632.1.S1_a_at10/111+42290975..42296957amidohydrolase family protein, putative, expressed
LOC_Os01g72370Os.12498.1.S1_at11/111+42298293..42304987Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g72360Os.12498.2.S1_at11/111+42298383..42300057expressed protein
LOC_Os01g72380Os.19497.1.S1_at11/111+42308965..42311893expressed protein
LOC_Os01g72390OsAffx.9670.1.S1_at11/111+42312927..42315705NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28112.1.S1_at--8--4111Chr01:42288915..42289087 (25 bp)
CGACATCGAGGTGCATCTTGATCAC
LOC_Os01g72340
Os.28112.1.S1_at--94--7311Chr01:42289126..42289150 (25 bp)
GTGCGTGCACGAGCAGTACTTGCTG
LOC_Os01g72340
Os.28112.1.S1_at--992--4611Chr01:42289157..42289181 (25 bp)
GCGAGATACGCCTTCTCGGTGAGGC
LOC_Os01g72340
Os.28112.1.S1_at--1022--7191Chr01:42289204..42289228 (25 bp)
GTCGTGCCATGACATCTACCACTCT
LOC_Os01g72340
Os.28112.1.S1_at--1063--9951Chr01:42289233..42289257 (25 bp)
TACCCTGTTGATCCGTCTGAGATGG
LOC_Os01g72340
Os.28112.1.S1_at--290--4791Chr01:42289291..42289315 (25 bp)
GCTCCTGTAAACTACCGGCTGCAAT
LOC_Os01g72340
Os.28112.1.S1_at--796--1771Chr01:42289304..42289328 (25 bp)
ACCGGCTGCAATGACCAGGTTGTTT
LOC_Os01g72340
Os.28112.1.S1_at--118--1651Chr01:42289348..42289372 (25 bp)
AGCGAGCTTGATGCTATTCCTCAAT
LOC_Os01g72340
Os.28112.1.S1_at--588--91Chr01:42289363..42289387 (25 bp)
ATTCCTCAATCTTGACTACAGTGTC
LOC_Os01g72340
Os.28112.1.S1_at--956--7811Chr01:42289519..42289543 (25 bp)
GGTACGTGGGTATGGTTATATTCTT
LOC_Os01g72340
Os.28112.1.S1_at--37--3011Chr01:42289577..42289601 (25 bp)
AATCCCGTAGATTGAGCCTAAAACT
LOC_Os01g72340
Target Sequence 
CGACATCGAGGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGCCGTGCGTGCACGAGCAGT
ACTTGCTGCCGCCGGCGAGATACGCCTTCTCGGTGAGGCTGTGCCCGTTGCTGCCGTCGTCGTCGTGCCATGACATCTAC
CACTCTCAGCTACCCTGTTGATCCGTCTGAGATGGGCAAGTGAGGCAATAAAGCAGAGACGTNTATATGCTCCTGTAAAC
TACCGGCTGCAATGACCAGGTTGTTTGTCGACTGTGAAATAAGCGAGCGAGCTTGATGCTATTCCTCAATCTTGACTACA
GTGTCAATTTCTCCTATANATGGCAATGGGGACCCATGACCCNGATACCNGATGGGTTTTTACTNTATTAGAAGCTAATT
ATGTTCTAACTCTTANACTTATGGGTCTATTGATNGGCGAAAATTCTTACCCATTGGGTACGTGGGTATGGTTATATTCT
TTACCCACCCATACCCACAAACCTGTGGGTGAAAAATCCCGTAGATTGAGCCTAAAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28112.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis