Browse Element(s) Details


Os.28139.1.S1_at

Description gb:AK060655.1
DB_XREF= gi:32970673
TID=Os.28139.1
CNT=60
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28139 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) osmotin-like protein (P0031D11.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-028-A02, full insert sequence.
FL= gb:AK060655.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6226010/11Osmotin-like protein precursor, putative, expressed
LOC_Os04g469701/11Cis-zeatin O-glucosyltransferase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62200Os.38316.1.S1_at11/111+36329408..36331950expressed protein
LOC_Os01g62200Os.38316.1.S1_s_at10/111+36329408..36331950expressed protein
LOC_Os01g62200Os.27407.1.A1_at6/111+36329408..36331950expressed protein
LOC_Os01g62210Os.47966.1.S1_at10/111+36334251..36336745ribosomal protein L17 containing protein, expressed
LOC_Os01g62210OsAffx.21760.1.S1_at1/111+36334251..36336745ribosomal protein L17 containing protein, expressed
LOC_Os01g62220OsAffx.11696.1.S1_at11/111+36338499..36339869pentatricopeptide, putative
LOC_Os01g62230Os.19784.1.S1_at10/111+36340890..36341546Histone H2B, putative, expressed
LOC_Os01g62244Os.12603.1.S1_at11/111+36344054..36350317Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os01g62244Os.51168.1.S1_at1/111+36344054..36350317Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os01g62244Os.52300.1.S1_at1/111+36344054..36350317Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os01g62260Os.28139.1.S1_at10/111+36356643..36357818Osmotin-like protein precursor, putative, expressed
LOC_Os01g62280OsAffx.21758.1.S1_at9/111+36365678..36366068hypothetical protein
LOC_Os01g62290Os.46024.1.S1_at11/111+36366569..36370066Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os01g62290Os.57477.1.S1_x_at1/111+36366569..36370066Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os01g62300Os.7747.1.S1_at11/111+36371031..36373369SLT1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006805biological_processxenobiotic metabolism
GO:0009636biological_processresponse to toxin
GO:0042178biological_processxenobiotic catabolism
GO:0042828biological_processresponse to pathogen
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0035251molecular_functionUDP-glucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28139.1.S1_at--933--3911Chr01:36357200..36357224 (25 bp)
CTGGCGTGCCGCAAGAACCTGACCG
LOC_Os01g62260
Os.28139.1.S1_at--803--9011Chr01:36357122..36357146 (25 bp)
TGCAAGAGCGGCTGCGAGGCCTTCC
LOC_Os01g62260
Os.28139.1.S1_at--329--9491Chr01:36357085..36357109 (25 bp)
TCTGCTGCCGCAACATGTACAACAG
LOC_Os01g62260
Os.28139.1.S1_at--115--4811Chr01:36357046..36357070 (25 bp)
GCTCGTCCAAGTACTCGGAGTTCTT
LOC_Os01g62260
Os.28139.1.S1_at--1148--8031Chr01:36357030..36357054 (25 bp)
GGAGTTCTTCAAGCGCGAGTGCCCG
LOC_Os01g62260
Os.28139.1.S1_at--334--7131Chr01:36356936..36356960 (25 bp)
GTCATCTTCTGCCACTAGAATCCAG
LOC_Os01g62260
Os.28139.1.S1_at--745--4151Chr01:36356911..36356935 (25 bp)
CGCGCCAAGGCGTACTCGGTAGGAT
LOC_Os01g62260
Os.28139.1.S1_at--267--3851Chr01:36356770..36356794 (25 bp)
CTGCAGGGATGTCTGTGACTGTAAT
LOC_Os01g62260
Os.28139.1.S1_at--827--3371Chr01:36356726..36356750 (25 bp)
CAGCCTGAAATAACATGTTCCTAGT
LOC_Os01g62260
Os.28139.1.S1_at--409--8811Chr01:36356711..36356735 (25 bp)
TGTTCCTAGTGTGTTCAGATGTTTA
LOC_Os01g62260
Os.28139.1.S1_at--430--8515Chr04:27627183..27627202 (20 bp)
TGGAATGGACGTTCACCCGTTTATT
LOC_Os04g46970
Target Sequence 
CTGGCGTGCCGCAAGAACCTGACCGAGACCTGCCCCAGCGAGCTGCAGCTGCGCACGCCGGCGGGGAGCGTCGTGGCGTG
CAAGAGCGGCTGCGAGGCCTTCCGCACCGACGAGCTCTGCTGCCGCAACATGTACAACAGCCCGCGCACCTGCCGCTCGT
CCAAGTACTCGGAGTTCTTCAAGCGCGAGTGCCCGCAGGCCTTCACCTACGCGCACGACAGCCCGTCGCTCACCCACGAG
TGCGCCGCGCCGCGCGAGCTCAAGGTCATCTTCTGCCACTAGAATCCAGCGCGCCAAGGCGTACTCGGTAGGATCCCTTC
CGGGGTGTCTGTGACTGTGTTCTAATGTTCGATTAGCTCGCGGGTTTAGATGCTGGAGTCGTTACTTACGTTCGATTAGC
CCGTAATCGGTGTGCTGCTGCTTGTGTTGGCTGCAGGGATGTCTGTGACTGTAATGGTGTTACTGCCAGGTTTCCAGCCT
GAAATAACATGTTCCTAGTGTGTTCAGATGTTTANAAACATGNTCNACTATNGGAAACTGTTTTAACAGGTGGAATGGAC
GTTCACCCGTTTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28139.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis