Browse Element(s) Details


Os.7747.1.S1_at

Description gb:AK069954.1
DB_XREF= gi:32979978
TID=Os.7747.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.7747 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative SLT1 protein (ion homeostasis related protein) (P0031D11.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023034F22, full insert sequence.
FL= gb:AK069954.1 gb:AK103961.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6230011/11SLT1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62244Os.12603.1.S1_at11/111+36344054..36350317Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os01g62244Os.51168.1.S1_at1/111+36344054..36350317Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os01g62244Os.52300.1.S1_at1/111+36344054..36350317Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os01g62260Os.28139.1.S1_at10/111+36356643..36357818Osmotin-like protein precursor, putative, expressed
LOC_Os01g62280OsAffx.21758.1.S1_at9/111+36365678..36366068hypothetical protein
LOC_Os01g62290Os.46024.1.S1_at11/111+36366569..36370066Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os01g62290Os.57477.1.S1_x_at1/111+36366569..36370066Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os01g62300Os.7747.1.S1_at11/111+36371031..36373369SLT1 protein, putative, expressed
LOC_Os01g62310Os.16013.1.S1_at11/111+36384212..36386416Homeobox domain containing protein, expressed
LOC_Os01g62320OsAffx.22699.1.S1_x_at2/111+36395568..36400018retrotransposon protein, putative, unclassified
LOC_Os01g62320Os.45161.1.A1_x_at1/111+36395568..36400018retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0042538biological_processhyperosmotic salinity response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7747.1.S1_at--572--6371Chr01:36371592..36371616 (25 bp)
GATCCTTTGTGTTAGTACAGCCCAG
LOC_Os01g62300
Os.7747.1.S1_at--560--2711Chr01:36371534..36371558 (25 bp)
AAGCTTGCTGATCCTATGCCTGAGC
LOC_Os01g62300
Os.7747.1.S1_at--131--7371Chr01:36371485..36371509 (25 bp)
GTGAAATACCTCTAGCAACTCGCAT
LOC_Os01g62300
Os.7747.1.S1_at--103--4991Chr01:36371464..36371488 (25 bp)
GCATCCCTGAAGACGCTAAGCTAGA
LOC_Os01g62300
Os.7747.1.S1_at--766--891Chr01:36371425..36371449 (25 bp)
AGGCCGCTGCAGTGCTTGAGATCAT
LOC_Os01g62300
Os.7747.1.S1_at--956--8891Chr01:36371409..36371433 (25 bp)
TGAGATCATGGTTCCCAAACGTGGA
LOC_Os01g62300
Os.7747.1.S1_at--1162--1551Chr01:36371331..36371355 (25 bp)
AGCTAACGATCTACTCCTGACATAA
LOC_Os01g62300
Os.7747.1.S1_at--747--231Chr01:36371285..36371309 (25 bp)
ATATAGTCTTGTTTCTGACCACCAG
LOC_Os01g62300
Os.7747.1.S1_at--853--6871Chr01:36371197..36371221 (25 bp)
GTATTTGTCGTACTGCACTAGGCCT
LOC_Os01g62300
Os.7747.1.S1_at--1016--1631Chr01:36371168..36371192 (25 bp)
AGCGAAGTCTGCTGAAGGCTACTCA
LOC_Os01g62300
Os.7747.1.S1_at--411--8871Chr01:36371125..36371149 (25 bp)
TGATGGGTGTCTTTTTAGCCCTCAT
LOC_Os01g62300
Target Sequence 
GATCCTTTGTGTTAGTACAGCCCAGACGCCATACATCAGAAGGCATGACAGGGTATTCAAGCTTGCTGATCCTATGCCTG
AGCACTGCCCTCATGGGGAATTTGTCCGTGAAATACCTCTAGCAACTCGCATCCCTGAAGACGCTAAGCTAGAAGCATAC
TTTGATGAGGCCGCTGCAGTGCTTGAGATCATGGTTCCCAAACGTGGAAATGAGCCAGAAGAACATGAAGTAAGAGTCTC
TATGCGCCCCCCTCACCTTGCAGCTAACGATCTACTCCTGACATAACCAGTGGAAGGTCTATCAACCATATAGTCTTGTT
TCTGACCACCAGATCAATGCCCAAACATGGCTGAGAAGGTATGAGCATGACTGTGTTGGGAGTTTTGCTTTCTGAGTATT
TGTCGTACTGCACTAGGCCTCTTCAGCGAAGTCTGCTGAAGGCTACTCAGTTTGTTCTAGTATGTTATGATGGGTGTCTT
TTTAGCCCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7747.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis