Browse Element(s) Details


Os.16013.1.S1_at

Description gb:BI801131
DB_XREF= gi:16573835
DB_XREF=H039C07
CLONE=H039C07
TID=Os.16013.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.16013 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0408C03.16 (P0408C03.16), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6231011/11Homeobox domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62280OsAffx.21758.1.S1_at9/111+36365678..36366068hypothetical protein
LOC_Os01g62290Os.46024.1.S1_at11/111+36366569..36370066Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os01g62290Os.57477.1.S1_x_at1/111+36366569..36370066Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os01g62300Os.7747.1.S1_at11/111+36371031..36373369SLT1 protein, putative, expressed
LOC_Os01g62310Os.16013.1.S1_at11/111+36384212..36386416Homeobox domain containing protein, expressed
LOC_Os01g62320OsAffx.22699.1.S1_x_at2/111+36395568..36400018retrotransposon protein, putative, unclassified
LOC_Os01g62320Os.45161.1.A1_x_at1/111+36395568..36400018retrotransposon protein, putative, unclassified
LOC_Os01g62330NANA1+36400730..36402523retrotransposon protein, putative, unclassified
LOC_Os01g62340NANA1+36402921..36406125hypothetical protein
LOC_Os01g62350Os.6823.1.S1_at11/111+36409967..3641250360S ribosomal protein L36-2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009943biological_processadaxial/abaxial axis specification
GO:0009947biological_processcentrolateral axis specification
GO:0009965biological_processleaf morphogenesis
GO:0016049biological_processcell growth
GO:0045449biological_processregulation of transcription
GO:0048314biological_processembryo sac morphogenesis
GO:0048366biological_processleaf development
GO:0048437biological_processfloral organ development
GO:0048446biological_processpetal morphogenesis
GO:0048482biological_processovule morphogenesis
GO:0051301biological_processcell division
GO:0005634cellular_componentnucleus
GO:0048353cellular_componentprimary endosperm nucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16013.1.S1_at--170--5331Chr01:36384778..36384802 (25 bp)
GAAGTGTGTCCGCACGACAAGTCCA
LOC_Os01g62310
Os.16013.1.S1_at--875--9411Chr01:36384585..36384609 (25 bp)
TCGTGCTGCCGGATCACAAGCCGCT
LOC_Os01g62310
Os.16013.1.S1_at--242--6071Chr01:36384493..36384517 (25 bp)
GAGTCGGAGAGCTCGGACAGCCCCA
LOC_Os01g62310
Os.16013.1.S1_at--704--5691Chr01:36384445..36384469 (25 bp)
GACTTCTTCGGCGTCCATTCTGGAG
LOC_Os01g62310
Os.16013.1.S1_at--1090--7252Chr01:38985707..38985856 (24 bp)
GTCCATTCTGGAGGCCGCTGAGCGT
NONE
Os.16013.1.S1_at--809--10091Chr01:36384357..36384381 (25 bp)
TATCTTCATGAGTGGACGAACCCGT
LOC_Os01g62310
Os.16013.1.S1_at--58--8531Chr01:36384345..36384369 (25 bp)
TGGACGAACCCGTCGTGCTTTTTGA
LOC_Os01g62310
Os.16013.1.S1_at--568--7191Chr01:36384334..36384358 (25 bp)
GTCGTGCTTTTTGAAACTTATCTGC
LOC_Os01g62310
Os.16013.1.S1_at--596--10411Chr01:36384317..36384341 (25 bp)
TTATCTGCATTGTTGCATCGATCAT
LOC_Os01g62310
Os.16013.1.S1_at--1066--4971Chr01:36384303..36384327 (25 bp)
GCATCGATCATTGCATGGTTTAATT
LOC_Os01g62310
Os.16013.1.S1_at--777--2891Chr01:36384264..36384288 (25 bp)
AAGGTGTACTGCTTCATCAACTTGA
LOC_Os01g62310
Target Sequence 
GAAGTGTGTCCGCACGACAAGTCCACGGNCGNCAGCCACCGGNCCACCACCACCATGTACCTGCNAGGCANCCNCCGAGC
AGCGCANCACCTCGCGGCGGNNGCTGNCCNCGGCGCGGCGGAANCGGAAGGCCATGGCCGCCGCGGCGGCGGCGCCGGTG
GGCGCGAGACCCTCCAGCTGTTCCCCCTGCAGCCCACCTTCGTGCTGCCGGATCACAAGCCGCTCCGCGCCGGGAGCGCC
TGCGCCNCCGTGTCCCCGACGACGCCGTCCGCGTCCGCGTCGTTCTCGTGGGAGTCGGAGAGCTCGGACAGCCCCAGCAG
CGAGGCGCCTCCGTTCTACGACTTCTTCGGCGTCCATTCTGGAGGCCGCTGAGCGTGAAGGTGAGAGTGAGTGAGCGTAG
AGTGGAGTGGAGTGGNNTGGAAGTTGATATCTTCATGAGTGGACGAACCCGTCGTGCTTTTTGAAACTTATCTGCATTGT
TGCATCGATCATTGCATGGTTTAATTGGTTAAGGGATTGGAAGGTGTACTGCTTCATCAACTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16013.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis