Browse Element(s) Details


Os.46024.1.S1_at

Description gb:CB633557
DB_XREF= gi:29628546
DB_XREF=OSIIEb12H13.r
CLONE=OSIIEb12H13
TID=Os.46024.1
CNT=68
FEA=mRNA
TIER=ConsEnd
STK=3
UG=Os.46024 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative HSP70 (P0031D11.28), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6229011/11Heat shock cognate 70 kDa protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62244Os.12603.1.S1_at11/111+36344054..36350317Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os01g62244Os.51168.1.S1_at1/111+36344054..36350317Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os01g62244Os.52300.1.S1_at1/111+36344054..36350317Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os01g62260Os.28139.1.S1_at10/111+36356643..36357818Osmotin-like protein precursor, putative, expressed
LOC_Os01g62280OsAffx.21758.1.S1_at9/111+36365678..36366068hypothetical protein
LOC_Os01g62290Os.46024.1.S1_at11/111+36366569..36370066Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os01g62290Os.57477.1.S1_x_at1/111+36366569..36370066Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os01g62300Os.7747.1.S1_at11/111+36371031..36373369SLT1 protein, putative, expressed
LOC_Os01g62310Os.16013.1.S1_at11/111+36384212..36386416Homeobox domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0009615biological_processresponse to virus
GO:0005829cellular_componentcytosol
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46024.1.S1_at--864--2671Chr01:36369568..36369592 (25 bp)
AAGCTCTCGGCGGACGACAAGAAGA
LOC_Os01g62290
Os.46024.1.S1_at--1087--9791Chr01:36369817..36369841 (25 bp)
TAAGCTGGTGGTGGTCCTACGTGAT
LOC_Os01g62290
Os.46024.1.S1_at--318--8591Chr01:36369828..36369852 (25 bp)
TGGTCCTACGTGATTCCGGCTGGAA
LOC_Os01g62290
Os.46024.1.S1_at--712--91Chr01:36369840..36369864 (25 bp)
ATTCCGGCTGGAAGGGAGTCTGAAC
LOC_Os01g62290
Os.46024.1.S1_at--1121--6091Chr01:36369855..36369879 (25 bp)
GAGTCTGAACCGTGTGATGTGGCTG
LOC_Os01g62290
Os.46024.1.S1_at--710--791Chr01:36369871..36369895 (25 bp)
ATGTGGCTGGCGTCGTGTGATCCCC
LOC_Os01g62290
Os.46024.1.S1_at--104--7451Chr01:36369885..36369909 (25 bp)
GTGTGATCCCCTGTGTTTTTTAGCC
LOC_Os01g62290
Os.46024.1.S1_at--561--4191Chr01:36369893..36369917 (25 bp)
CCCTGTGTTTTTTAGCCGTCGAGAG
LOC_Os01g62290
Os.46024.1.S1_at--997--1671Chr01:36369906..36369930 (25 bp)
AGCCGTCGAGAGTTTCGTGCGATGA
LOC_Os01g62290
Os.46024.1.S1_at--79--7471Chr01:36369942..36369966 (25 bp)
GTGTGTATCGCCGTATGGTTTTACC
LOC_Os01g62290
Os.46024.1.S1_at--97--6891Chr01:36369946..36369970 (25 bp)
GTATCGCCGTATGGTTTTACCTGAA
LOC_Os01g62290
Target Sequence 
AAGCTCTCGGCGGACGACAAGAAGAAGATCGAGGACGCCATCGACGGCGCCATCAACTGGCTCGACAGCAACCAGCTCGC
GGAGGCGGACGAGTTCGAGGACAAGATGAAGGAGCTGGAGAGCATCTGCAACCCCATCATCGCGAAGATGTACCAGGGCG
CCGGCGCGGACATGGGCGGCGCCGCTGGCATGGACGAGGACGCGCCGGCGGGTGGCAGCGGTGCAGGCCCCAAGATCGAG
GAGGTCGATTAAGCTGGTGGTGGTCCTACGTGATTCCGGCTGGAAGGGAGTCTGAACCGTGTGATGTGGCTGGCGTCGTG
TGATCCCCTGTGTTTTTTAGCCGTCGAGAGTTTCGTGCGATGAAGCTTTTGNAAGTGTGTATCGCCGTATGGTTTTACCT
GAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46024.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis