Browse Element(s) Details


Os.28261.1.S1_a_at

Description gb:AY331574.1
DB_XREF= gi:34555649
TID=Os.28261.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28261 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) flowering time control protein isoform rFCA-4 mRNA, complete cds; alternatively spliced.
PROD=flowering time control protein isoform rFCA-4
FL= gb:AK058419.1 gb:AY331574.1 gb:AY311343.1 gb:AY274928.1 gb:AK073225.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0361011/11FCA protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g03580NANA9+1763591..1765060hypothetical protein
LOC_Os09g03590NANA9+1768286..1772977retrotransposon protein, putative, unclassified
LOC_Os09g03600Os.27501.1.S1_at11/119+1779100..1785142expressed protein
LOC_Os09g03610Os.28261.1.S1_a_at11/119+1789446..1798556FCA protein, putative, expressed
LOC_Os09g03620Os.12669.1.S1_at11/119+1802979..1809811Protein kinase domain containing protein, expressed
LOC_Os09g03620OsAffx.379.1.S1_at1/119+1802979..1809811Protein kinase domain containing protein, expressed
LOC_Os09g03620Os.12980.1.S1_at1/119+1802979..1809811Protein kinase domain containing protein, expressed
LOC_Os09g03630Os.27336.1.S1_at11/119+1813051..1821556Death-associated protein kinase 1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009909biological_processregulation of flower development
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28261.1.S1_a_at--1058--5051Chr09:1796453..1796477 (25 bp)
GCAGCAGCAATCGAATCTAAACCAT
LOC_Os09g03610
Os.28261.1.S1_a_at--158--2131Chr09:1796605..1796629 (25 bp)
ACAGGGTCAGCCAGTGCAATCTAGT
LOC_Os09g03610
Os.28261.1.S1_a_at--867--7331Chr09:1796618..1796642 (25 bp)
GTGCAATCTAGTAACCCTGGTGCCC
LOC_Os09g03610
Os.28261.1.S1_a_at--191--8451Chr09:1796635..1796659 (25 bp)
TGGTGCCCCAAATGCCATTATTCCA
LOC_Os09g03610
Os.28261.1.S1_a_at--684--3571Chr09:1796665..1796689 (25 bp)
CATTAATACAATTCCCCAGCAGGCT
LOC_Os09g03610
Os.28261.1.S1_a_at--995--5232Chr09:1796702..1796726 (25 bp)
GTTCCTTTAACCTGCAATTGGACTG
LOC_Os09g03610
Os.28261.1.S1_a_at--711--1971Chr09:1796723..1796747 (25 bp)
ACTGAACATACGTCTCCTGAAGGTT
LOC_Os09g03610
Os.28261.1.S1_a_at--1065--2411Chr09:1796956..1796980 (25 bp)
AAAACTTGCCATGCAGCAACTTCAG
LOC_Os09g03610
Os.28261.1.S1_a_at--196--1471Chr09:1797007..1797031 (25 bp)
AGCAATGCAACCTGTCCAACAAATT
LOC_Os09g03610
Os.28261.1.S1_a_at--841--5211Chr09:1797563..1797587 (25 bp)
GAATTATACTCAGCTACAGACTCCT
LOC_Os09g03610
Os.28261.1.S1_a_at--668--9851Chr09:1797577..1797601 (25 bp)
TACAGACTCCTGGTGCTATTGATCC
LOC_Os09g03610
Target Sequence 
GCAGCAGCAATCGAATCTAAACCATCAACAACCCACACAGGGTCAGCCAGTGCAATCTAGTAACCCTGGTGCCCCAAATG
CCATTATTCCATCAAACATTAATACAATTCCCCAGCAGGCTACTTCACCTGCAGTTCCTTTAACCTGCAATTGGACTGAA
CATACGTCTCCTGAAGGTTTTAAATACTACTACAATAGCATAACTCGAGAGAGTAAGTGGGATAAGCCTGAAGAGTATGT
GCTGTATGAGCAACAGCAACAGCAGCAGCAACAGCAGAAACTACTTTTGCTTCAACAGCACCAACAAAAACTTGCCATGC
AGCAACTTCAGTCACCACCTCAGGCTCAGACACATCCAGCAATGCAACCTGTCCAACAAATTCCTCAGGCACAACAAGGA
CAGCAACAAATGCAGATGAAACAGCAGGAATTGAATTATACTCAGCTACAGACTCCTGGTGCTATTGATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28261.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis