Browse Element(s) Details


Os.12669.1.S1_at

Description gb:AK065517.1
DB_XREF= gi:32975535
TID=Os.12669.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12669 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013027P20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013027P20, full insert sequence.
FL= gb:AK065517.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0362011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g03600Os.27501.1.S1_at11/119+1779100..1785142expressed protein
LOC_Os09g03610Os.28261.1.S1_a_at11/119+1789446..1798556FCA protein, putative, expressed
LOC_Os09g03620Os.12669.1.S1_at11/119+1802979..1809811Protein kinase domain containing protein, expressed
LOC_Os09g03620OsAffx.379.1.S1_at1/119+1802979..1809811Protein kinase domain containing protein, expressed
LOC_Os09g03620Os.12980.1.S1_at1/119+1802979..1809811Protein kinase domain containing protein, expressed
LOC_Os09g03630Os.27336.1.S1_at11/119+1813051..1821556Death-associated protein kinase 1, putative, expressed
LOC_Os09g03640NANA9+1825425..1826113hypothetical protein
LOC_Os09g03650OsAffx.576.1.S1_at4/119+1831098..1837967transposon protein, putative, unclassified
LOC_Os09g03650OsAffx.10530.1.S1_at1/119+1831098..1837967transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12669.1.S1_at--420--3611Chr09:1808888..1808912 (25 bp)
CTTGTGGAAATTCTCTCTGCTCGCC
LOC_Os09g03620
Os.12669.1.S1_at--326--9291Chr09:1809354..1809378 (25 bp)
TCCGTTGTTGGAGGATCCTGTGGAC
LOC_Os09g03620
Os.12669.1.S1_at--675--8891Chr09:1809381..1809405 (25 bp)
TGAGGTGCTCGAAAGGCTGCTGAAC
LOC_Os09g03620
Os.12669.1.S1_at--383--10871Chr09:1809406..1809430 (25 bp)
TTGGCATTCCAGTGTGCCGCTCCGA
LOC_Os09g03620
Os.12669.1.S1_at--936--4811Chr09:1809532..1809556 (25 bp)
GCTCTTTAGGCTTTTGATCTTCAGA
LOC_Os09g03620
Os.12669.1.S1_at--463--1411Chr09:1809554..1809578 (25 bp)
AGACATGCATATTCTTTGTGCCATT
LOC_Os09g03620
Os.12669.1.S1_at--210--10831Chr09:1809569..1809593 (25 bp)
TTGTGCCATTGTATACGCATGTGGT
LOC_Os09g03620
Os.12669.1.S1_at--561--9071Chr09:1809615..1809639 (25 bp)
TGCTTCCAAATGTGCTACTTATTGA
LOC_Os09g03620
Os.12669.1.S1_at--862--1711Chr09:1809662..1809686 (25 bp)
ACCAGCCGCACTTTGTATGTATCTT
LOC_Os09g03620
Os.12669.1.S1_at--1106--131Chr09:1809699..1809723 (25 bp)
ATTACATGACTGGTGTTGCGGGTTT
LOC_Os09g03620
Os.12669.1.S1_at--1127--9131Chr09:1809715..1809739 (25 bp)
TGCGGGTTTATTTCTCCATGGAGCT
LOC_Os09g03620
Target Sequence 
CTTGTGGAAATTCTCTCTGCTCGCCGACCGGTAGAACTGAAGCGGGCTGCTGAAGAGAGAATAACTATCAGATGGACATT
CAAGAAATTCAATGAAGGGAACAGGAGGGAGATATTGGATCCGTTGTTGGAGGATCCTGTGGACGATGAGGTGCTCGAAA
GGCTGCTGAACTTGGCATTCCAGTGTGCCGCTCCGACGCGGGAGGACCGTCCGACCATGAAAGAAGTTGGAGAGCAGCTG
TGGGAGATCAGGAAGGAGTATGGAAAGAGTGTCAGGAGGGTGTGAACATTAAAGTTAGCTCTTTAGGCTTTTGATCTTCA
GACATGCATATTCTTTGTGCCATTGTATACGCATGTGGTGATATGATGTTTCTGCTGAGNTGCTTCCAAATGTGCTACTT
ATTGAACAATGTACAGAGAGGGGTAACACCAGCCGCACTTTGTATGTATCTTTCTACTTTTGGAATTACATGACTGGTGT
TGCGGGTTTATTTCTCCATGGAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12669.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis