Browse Element(s) Details


OsAffx.576.1.S1_at

Description gb:XM_354009.1
DB_XREF= gi:35189451
TID=OsAffx.576.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g036504/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g03620Os.12669.1.S1_at11/119+1802979..1809811Protein kinase domain containing protein, expressed
LOC_Os09g03620OsAffx.379.1.S1_at1/119+1802979..1809811Protein kinase domain containing protein, expressed
LOC_Os09g03620Os.12980.1.S1_at1/119+1802979..1809811Protein kinase domain containing protein, expressed
LOC_Os09g03630Os.27336.1.S1_at11/119+1813051..1821556Death-associated protein kinase 1, putative, expressed
LOC_Os09g03640NANA9+1825425..1826113hypothetical protein
LOC_Os09g03650OsAffx.576.1.S1_at4/119+1831098..1837967transposon protein, putative, unclassified
LOC_Os09g03650OsAffx.10530.1.S1_at1/119+1831098..1837967transposon protein, putative, unclassified
LOC_Os09g03660NANA9+1838844..1841929retrotransposon protein, putative, unclassified
LOC_Os09g03670OsAffx.17554.1.S1_at11/119+1844736..1845422hypothetical protein
LOC_Os09g03680Os.14374.1.S1_at11/119+1849573..1858251TPR Domain containing protein, expressed
LOC_Os09g03680OsAffx.6162.1.S1_s_at11/119+1849573..1858251TPR Domain containing protein, expressed
LOC_Os09g03690Os.49437.1.S1_at10/119+1860957..1863180Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.576.1.S1_at--439--7091Chr07:21068869..21068893 (25 bp)
GTCAACGAAGTATTTTTCGGACATT
NONE
OsAffx.576.1.S1_at--787--70717Chr11:18965219..18965330 (25 bp)
GTCCGAAAACAACAACATCGTTCTG
NONE
OsAffx.576.1.S1_at--617--20916Chr11:18965320..18965344 (25 bp)
ACATCGTTCTGGATGTTCTCGGAAA
NONE
OsAffx.576.1.S1_at--866--54114Chr11:18965384..18965408 (25 bp)
GAAGCGAAATTGACTCTACTGATGA
NONE
OsAffx.576.1.S1_at--651--5713Chr07:21069002..21069026 (25 bp)
GACTCTACTGATGATTTTCAGAAAA
NONE
OsAffx.576.1.S1_at--779--27514Chr10:22006..22030 (25 bp)
AATCCAAAAATCAGTTTCGGACAAG
NONE
OsAffx.576.1.S1_at--347--72520Chr12:11094929..11094953 (25 bp)
GTCCGAAAATATACAGAACCACTTT
NONE
OsAffx.576.1.S1_at--168--101716Chr10:8528..8552 (25 bp)
TATACAGAACCACTTTTGCCTTCGC
NONE
OsAffx.576.1.S1_at--220--10697Chr10:8543..8567 (25 bp)
TTGCCTTCGCAGTCATTTTCGGAAA
NONE
OsAffx.576.1.S1_at--151--93511Chr12:11094959..11094983 (25 bp)
TCGCAGTCATTTTCGGAAAGTCCGA
NONE
OsAffx.576.1.S1_at--479--5513Chr12:11094982..11095006 (25 bp)
GAAAATCACTTTTGGACATATCCGA
NONE
Target Sequence 
GTCAACGAAGTATTTTTCGGACATTCCGAAAACTTTTCGGACAAGTCCGAAAACAACAACATCGTTCTGGATGTTCTCGG
AAAAGTCCGAAAATCACTTTCGGACAAGTTCGAAAATATACAGAAGCGAAATTGACTCTACTGATGATTTTCAGAAAATC
CAAAAATCAGTTTCGGACAAGTCCGAAAATATACAGAACCACTTTTGCCTTCGCAGTCATTTTCGGAAAGTCCGAAAATC
ACTTTTGGACATATCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.576.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis