Browse Element(s) Details


OsAffx.17554.1.S1_at

Description tigr:9637.m00189
TID=OsAffx.17554.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0367011/11hypothetical protein
LOC_Os02g225502/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g03630Os.27336.1.S1_at11/119+1813051..1821556Death-associated protein kinase 1, putative, expressed
LOC_Os09g03640NANA9+1825425..1826113hypothetical protein
LOC_Os09g03650OsAffx.576.1.S1_at4/119+1831098..1837967transposon protein, putative, unclassified
LOC_Os09g03650OsAffx.10530.1.S1_at1/119+1831098..1837967transposon protein, putative, unclassified
LOC_Os09g03660NANA9+1838844..1841929retrotransposon protein, putative, unclassified
LOC_Os09g03670OsAffx.17554.1.S1_at11/119+1844736..1845422hypothetical protein
LOC_Os09g03680Os.14374.1.S1_at11/119+1849573..1858251TPR Domain containing protein, expressed
LOC_Os09g03680OsAffx.6162.1.S1_s_at11/119+1849573..1858251TPR Domain containing protein, expressed
LOC_Os09g03690Os.49437.1.S1_at10/119+1860957..1863180Myb-like DNA-binding domain containing protein, expressed
LOC_Os09g03700Os.31312.2.S1_x_at2/119+1864906..1868249retrotransposon protein, putative, unclassified, expressed
LOC_Os09g03700Os.31312.5.S1_x_at2/119+1864906..1868249retrotransposon protein, putative, unclassified, expressed
LOC_Os09g03700Os.28943.1.S1_x_at1/119+1864906..1868249retrotransposon protein, putative, unclassified, expressed
LOC_Os09g03710OsAffx.22492.1.S1_x_at1/119+1868998..1874215retrotransposon protein, putative, unclassified
LOC_Os09g03710OsAffx.22492.1.S1_at1/119+1868998..1874215retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17554.1.S1_at--391--4451Chr09:1844846..1844870 (25 bp)
GCCTCGTGCATCATGTCGGGGAAGC
LOC_Os09g03670
OsAffx.17554.1.S1_at--465--1491Chr09:1844824..1844848 (25 bp)
AGCACATGAGCTTTGTCCGCAAATT
LOC_Os09g03670
OsAffx.17554.1.S1_at--1029--5111Chr09:1844823..1844847 (25 bp)
GCACATGAGCTTTGTCCGCAAATTC
LOC_Os09g03670
OsAffx.17554.1.S1_at--312--2111Chr09:1844821..1844845 (25 bp)
ACATGAGCTTTGTCCGCAAATTCAT
LOC_Os09g03670
OsAffx.17554.1.S1_at--754--5911Chr09:1844817..1844841 (25 bp)
GAGCTTTGTCCGCAAATTCATGCCA
LOC_Os09g03670
OsAffx.17554.1.S1_at--496--4871Chr09:1844815..1844839 (25 bp)
GCTTTGTCCGCAAATTCATGCCAGA
LOC_Os09g03670
OsAffx.17554.1.S1_at--705--10251Chr09:1844813..1844837 (25 bp)
TTTGTCCGCAAATTCATGCCAGAGG
LOC_Os09g03670
OsAffx.17554.1.S1_at--847--10811Chr09:1844812..1844836 (25 bp)
TTGTCCGCAAATTCATGCCAGAGGA
LOC_Os09g03670
OsAffx.17554.1.S1_at--223--5131Chr09:1844806..1844830 (25 bp)
GCAAATTCATGCCAGAGGACGCCGT
LOC_Os09g03670
OsAffx.17554.1.S1_at--1150--2232Chr02:13449254..13449274 (21 bp)
AAATTCATGCCAGAGGACGCCGTCG
LOC_Os02g22550
OsAffx.17554.1.S1_at--132--132Chr02:13449254..13449276 (23 bp)
ATTCATGCCAGAGGACGCCGTCGTG
LOC_Os02g22550
Target Sequence 
GCCTCGTGCATCATGTCGGGGAAGCACATGAGCTTTGTCCGCAAATTCATGCCAGAGGACGCCGTCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17554.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis