Browse Element(s) Details


Os.27336.1.S1_at

Description gb:AK100990.1
DB_XREF= gi:32986199
TID=Os.27336.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27336 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023145M04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023145M04, full insert sequence.
FL= gb:AK100990.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0363011/11Death-associated protein kinase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g03610Os.28261.1.S1_a_at11/119+1789446..1798556FCA protein, putative, expressed
LOC_Os09g03620Os.12669.1.S1_at11/119+1802979..1809811Protein kinase domain containing protein, expressed
LOC_Os09g03620OsAffx.379.1.S1_at1/119+1802979..1809811Protein kinase domain containing protein, expressed
LOC_Os09g03620Os.12980.1.S1_at1/119+1802979..1809811Protein kinase domain containing protein, expressed
LOC_Os09g03630Os.27336.1.S1_at11/119+1813051..1821556Death-associated protein kinase 1, putative, expressed
LOC_Os09g03640NANA9+1825425..1826113hypothetical protein
LOC_Os09g03650OsAffx.576.1.S1_at4/119+1831098..1837967transposon protein, putative, unclassified
LOC_Os09g03650OsAffx.10530.1.S1_at1/119+1831098..1837967transposon protein, putative, unclassified
LOC_Os09g03660NANA9+1838844..1841929retrotransposon protein, putative, unclassified
LOC_Os09g03670OsAffx.17554.1.S1_at11/119+1844736..1845422hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009860biological_processpollen tube growth
GO:0005242molecular_functioninward rectifier potassium channel activity
GO:0005267molecular_functionpotassium channel activity
GO:0015271molecular_functionoutward rectifier potassium channel activity
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27336.1.S1_at--867--1431Chr09:1813875..1813899 (25 bp)
AGAACTTACCACTAATGCTCATGAT
LOC_Os09g03630
Os.27336.1.S1_at--389--1711Chr09:1813323..1813347 (25 bp)
ACCAAATGGAGCACAGAGGTTGATT
LOC_Os09g03630
Os.27336.1.S1_at--424--1331Chr09:1813309..1813333 (25 bp)
AGAGGTTGATTCAGCCTTACCTTGC
LOC_Os09g03630
Os.27336.1.S1_at--306--3671Chr09:1813294..1813318 (25 bp)
CTTACCTTGCGCCTCTATTTTGTTG
LOC_Os09g03630
Os.27336.1.S1_at--144--3072Chr12:26948895..26948922 (25 bp)
AATCTAAGACATGCGACATATTCTA
NONE
Os.27336.1.S1_at--61--7952Chr12:3691190..3691209 (20 bp)
GGATATGTCACATCTGTTACGGTTT
NONE
Os.27336.1.S1_at--817--7231Chr09:1813138..1813162 (25 bp)
GTCCCAAAGACATTTTGGCTGCCAA
LOC_Os09g03630
Os.27336.1.S1_at--175--4291Chr09:1813117..1813141 (25 bp)
CCAACGGACAAGCTTTTGCGTTTTG
LOC_Os09g03630
Os.27336.1.S1_at--522--10691Chr09:1813102..1813126 (25 bp)
TTGCGTTTTGTTAACCTGAGACCTG
LOC_Os09g03630
Os.27336.1.S1_at--263--1771Chr09:1813089..1813113 (25 bp)
ACCTGAGACCTGAGAGTTTAGTGTT
LOC_Os09g03630
Os.27336.1.S1_at--547--2531Chr09:1813057..1813081 (25 bp)
AACTATGTGGGAACTATTTCATGGT
LOC_Os09g03630
Target Sequence 
AGAACTTACCACTAATGCTCATGATAAGGCAACCCTGCTAGCAAACAGGAGCCTGTGCTGGTTGCGTTTGTCAACCGGCA
ATGGGGCTCTTGCTGATGCTAACATGTGCAGAATGTTGCGGCCCAGTTGGCCCAAAGCATGCTATCGACAAGGGGCAGCT
TTCATGTTTCTAAAGGACTATGGAAAAGCTTGTGAAGCTTTTGCAGATGGCTTGAAGTTGGACCCTGCAAATGAAGATAT
AGCGAAAGCTTTAAGGGATGCCCAGGAGGCCATGAAGGACCAAATGGAGCACAGAGGTTGATTCAGCCTTACCTTGCGCC
TCTATTTTGTTGCTAGCTACTCCCTCCGTTCTATAAAAAGTATAAATCTAAGACATGCGACATATTCTAATACTATGAAT
TTAATATAAATTAGGATATGTCACATCTGTTACGGTTTGTATTTTATGGTAAAGAGGGAGTAAGTCCCAAAGACATTTTG
GCTGCCAACGGACAAGCTTTTGCGTTTTGTTAACCTGAGACCTGAGAGTTTAGTGTTAAATGTGAACTATGTGGGAACTA
TTTCATGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27336.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis