Browse Element(s) Details


Os.28405.1.S1_x_at

Description gb:AK059258.1
DB_XREF= gi:32969276
TID=Os.28405.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28405 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative guanylate binding protein (OSJNBa0094F01.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-025-A02, full insert sequence.
FL= gb:AK059258.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g553895/11Casein kinase II, alpha chain 1, putative, expressed
LOC_Os03g582403/11guanylate-binding family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55350Os.10403.1.S1_at11/113+31426929..31429788cucumisin-like serine protease, putative, expressed
LOC_Os03g55360Os.23915.1.S1_at11/113+31434870..31439304DnaJ domain containing protein, expressed
LOC_Os03g55370OsAffx.13493.1.S1_at11/113+31440423..31441343hypothetical protein
LOC_Os03g55370OsAffx.24548.1.S1_x_at1/113+31440423..31441343hypothetical protein
LOC_Os03g55380Os.55956.1.S1_at11/113+31442709..31446679prolyl 4-hydroxylase, putative, expressed
LOC_Os03g55389Os.1175.1.S1_at10/113+31447755..31453402Casein kinase II, alpha chain 1, putative, expressed
LOC_Os03g55389Os.28405.1.S1_x_at5/113+31447755..31453402Casein kinase II, alpha chain 1, putative, expressed
LOC_Os03g55400Os.55702.1.S1_at11/113+31456300..31457825expressed protein
LOC_Os03g55410Os.32471.1.S1_at11/113+31465668..31467190Peroxidase 51 precursor, putative, expressed
LOC_Os03g55420Os.11548.1.S1_at11/113+31469757..31472467Peroxidase 35 precursor, putative, expressed
LOC_Os03g55430Os.10390.1.S1_at11/113+31476797..31477784expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006955biological_processimmune response
GO:0003924molecular_functionGTPase activity
GO:0004680molecular_functioncasein kinase activity
GO:0005525molecular_functionGTP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28405.1.S1_x_at--451--3051Chr03:33122071..33122094 (24 bp)
AATCTACAACCTTCCTGAGACGGTG
LOC_Os03g58240
Os.28405.1.S1_x_at--519--251Chr03:33122194..33122218 (25 bp)
ATATCTAGGCTCTCATTTGCTGTTG
LOC_Os03g58240
Os.28405.1.S1_x_at--794--1551Chr03:33122463..33122487 (25 bp)
AGCTTCTTTGGCTTATCCAGAGGGA
LOC_Os03g58240
Os.28405.1.S1_x_at--922--7011Chr03:31447970..31447994 (25 bp)
GTACTTCCTCCAAGTGAGAGCTGCA
LOC_Os03g55389
Os.28405.1.S1_x_at--1081--3191Chr03:31447924..31447948 (25 bp)
CAATGATCTTGTGTACCTGCTAAAA
LOC_Os03g55389
Os.28405.1.S1_x_at--772--6291Chr03:31447886..31447910 (25 bp)
GATGATCCACGACGGTACTACTTTG
LOC_Os03g55389
Os.28405.1.S1_x_at--954--6391Chr03:31447848..31447872 (25 bp)
GATCGTGGAATGTGCTTGTAGCCTT
LOC_Os03g55389
Os.28405.1.S1_x_at--673--3331Chr03:31447804..31447828 (25 bp)
CACTCCGTTGGTTGCGTTTGATGAA
LOC_Os03g55389
Os.28405.1.S1_x_at--614--4031Chr03:31447728..31447752 (25 bp)
CGATTAAGATGCAACAGGTACCTGT
NONE
Os.28405.1.S1_x_at--138--1771Chr03:31447709..31447733 (25 bp)
ACCTGTATGACAGCATGAGCCTTGT
NONE
Os.28405.1.S1_x_at--562--4991Chr03:31447697..31447721 (25 bp)
GCATGAGCCTTGTTAAGCTTGTTTC
NONE
Target Sequence 
AATCTACAACCTTCCTGAGACGGTGCGTGAAGCTGATATATCTAGGCTCTCATTTGCTGTTGAGATTGCAGAAGAATTCT
ATGGAAGGGGCAAGATGTTGCTTTTGAACCAGCAAAGCTTCTTTGGCTTATCCAGAGGGATTTCCTGCAAGGAAAATCTG
TTCAGCAAATGGTCAATGAAGCCCTCCAACGGGTACCTAACGAAAGTGGGGACAAATATATTGATGAGGTTAATCAAATT
AGAGANNNTNTNNNNNNTNNNNNCNANNANAGNNNNNCTNNNNGNNNNNCNNNGGCACATCCGTACTTCCTCCAAGTGAG
AGCTGCAGAAAATAGCAGAGCACGACCACAATGATCTTGTGTACCTGCTAAAATGATGATCCAGCTGATGATCCACGACG
GTACTACTTTGAGTTTGTGTGAACGATCGTGGAATGTGCTTGTAGCCTTGNATTTGTAAACTGTAATTCACTCCGTTGGT
TGCGTTTGATGAATGCCGTGACATGCACATAATTATTTATTTCTGTAATGTTTTACCATAACAACGATTAAGATGCAACA
GGTACCTGTATGACAGCATGAGCCTTGTTAAGCTTGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28405.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis