Browse Element(s) Details


Os.28418.1.S1_a_at

Description gb:AK066802.1
DB_XREF= gi:32976820
TID=Os.28418.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28418 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013151A20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013075O08, full insert sequence.
FL= gb:AK065878.1 gb:AK067686.1 gb:AK066802.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4136011/11Ribose-phosphate pyrophosphokinase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41350NANA6+24768047..24768610transposon protein, putative, unclassified
LOC_Os06g41360Os.28418.1.S1_a_at11/116+24788479..24792568Ribose-phosphate pyrophosphokinase 2, putative, expressed
LOC_Os06g41370NANA6+24795550..24798356hypothetical protein
LOC_Os06g41380Os.57073.1.S1_at11/116+24804549..24807592expressed protein
LOC_Os06g41390Os.5942.1.S1_at11/116+24807830..24816725Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os06g41390Os.49688.1.S1_at9/116+24807830..24816725Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009165biological_processnucleotide biosynthesis
GO:0004749molecular_functionribose phosphate diphosphokinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28418.1.S1_a_at--400--1671Chr06:24789001..24789025 (25 bp)
AGCCCTCCTGCGATTGAAAGGCTCT
LOC_Os06g41360
Os.28418.1.S1_a_at--479--2311Chr06:24788985..24789009 (25 bp)
AAAGGCTCTCTGGAGGCATCTTTGA
LOC_Os06g41360
Os.28418.1.S1_a_at--739--31Chr06:24788953..24788977 (25 bp)
ATTGTGACAAACTCCATTCTGCTGC
LOC_Os06g41360
Os.28418.1.S1_a_at--393--111Chr06:24788938..24788962 (25 bp)
ATTCTGCTGCCAGAGCACAAATGCT
LOC_Os06g41360
Os.28418.1.S1_a_at--358--1131Chr06:24788900..24788924 (25 bp)
AGTGCTCTCAATGGCGAACCTTGTG
LOC_Os06g41360
Os.28418.1.S1_a_at--191--491Chr06:24788866..24788890 (25 bp)
ATCTGGCATGTTCATCGCGATGGCT
LOC_Os06g41360
Os.28418.1.S1_a_at--146--8331Chr06:24788845..24788869 (25 bp)
GGCTCTGTGAGCAGCATATTTCAAT
LOC_Os06g41360
Os.28418.1.S1_a_at--994--851Chr06:24788807..24788831 (25 bp)
ATGGCTACCGCGATGCCACATTTGT
LOC_Os06g41360
Os.28418.1.S1_a_at--775--7291Chr06:24788755..24788779 (25 bp)
GTGCCCATCTGCGTAGGAATCAATT
LOC_Os06g41360
Os.28418.1.S1_a_at--547--3071Chr06:24788591..24788615 (25 bp)
AATCAGTCTCGTGCAGTTCTTTCAT
LOC_Os06g41360
Os.28418.1.S1_a_at--748--6711Chr06:24788576..24788600 (25 bp)
GTTCTTTCATCCTTTAGCAACTGTT
LOC_Os06g41360
Target Sequence 
AGCCCTCCTGCGATTGAAAGGCTCTCTGGAGGCATCTTTGAGGAAGTTATTGTGACAAACTCCATTCTGCTGCCAGAGCA
CAAATGCTTCCCCCAGTTGACAGTGCTCTCAATGGCGAACCTTGTGGCAGAAACAATCTGGCATGTTCATCGCGATGGCT
CTGTGAGCAGCATATTTCAATAGCGGCGGATGCTATGGCTACCGCGATGCCACATTTGTGTGGTGTNGAGAAGGCACCTG
ATGGTTGTGCCCATCTGCGTAGGAATCAATTTTGGTGACAAGACTAAATAAGGTTGTAGTGCCGTGTAGGCATCACACAT
GTATCGTGTGATCAATTTTGTTCTTGCACCCACTAAATAGTGTTTTCCTGTTAACTCGACGCAGGATATCCATTGTATCA
AGTATAAGAGAATCAGTCTCGTGCAGTTCTTTCATCCTTTAGCAACTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28418.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis