Browse Element(s) Details


Os.57073.1.S1_at

Description gb:AK110866.1
DB_XREF= gi:32996075
TID=Os.57073.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57073 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-E01, full insert sequence.
FL= gb:AK110866.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4138011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41360Os.28418.1.S1_a_at11/116+24788479..24792568Ribose-phosphate pyrophosphokinase 2, putative, expressed
LOC_Os06g41370NANA6+24795550..24798356hypothetical protein
LOC_Os06g41380Os.57073.1.S1_at11/116+24804549..24807592expressed protein
LOC_Os06g41390Os.5942.1.S1_at11/116+24807830..24816725Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os06g41390Os.49688.1.S1_at9/116+24807830..24816725Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os06g41410Os.35458.1.S1_at11/116+24818856..24829136expressed protein
LOC_Os06g41410OsAffx.15876.1.A1_at9/116+24818856..24829136expressed protein
LOC_Os06g41410Os.36709.1.S1_x_at3/116+24818856..24829136expressed protein
LOC_Os06g41410Os.8753.4.S1_x_at1/116+24818856..24829136expressed protein
LOC_Os06g41410Os.6763.1.S1_x_at1/116+24818856..24829136expressed protein
LOC_Os06g41410OsAffx.5273.1.S1_at1/116+24818856..24829136expressed protein
LOC_Os06g41440Os.5275.1.S1_at10/116+24830707..24838945legume lectins beta domain PF|00139 containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57073.1.S1_at--223--3011Chr06:24807075..24807099 (25 bp)
AATGAAGGCCCTGAGACCGAGACGC
LOC_Os06g41380
Os.57073.1.S1_at--997--8371Chr06:24807122..24807146 (25 bp)
GGCGATCAGGAAGCTCTGCAGGAAC
LOC_Os06g41380
Os.57073.1.S1_at--159--9491Chr06:24807136..24807160 (25 bp)
TCTGCAGGAACCGAGGCCTGGTCAT
LOC_Os06g41380
Os.57073.1.S1_at--172--6231Chr06:24807148..24807172 (25 bp)
GAGGCCTGGTCATGCACGACATGAA
LOC_Os06g41380
Os.57073.1.S1_at--30--3511Chr06:24807209..24807233 (25 bp)
CATGGACGCGCAGGTGTCTCAGCTG
LOC_Os06g41380
Os.57073.1.S1_at--362--9511Chr06:24807225..24807249 (25 bp)
TCTCAGCTGGCGTCGAAGCGCAGGC
LOC_Os06g41380
Os.57073.1.S1_at--633--5971Chr06:24807376..24807400 (25 bp)
GAGAAGCCAATCAGCTTAGCTTAGC
LOC_Os06g41380
Os.57073.1.S1_at--1066--8951Chr06:24807426..24807450 (25 bp)
TGAAACGGCTTAGCGGCATTGCACG
LOC_Os06g41380
Os.57073.1.S1_at--835--5091Chr06:24807446..24807470 (25 bp)
GCACGGCCCGTGTCAGTTTTTGGAT
LOC_Os06g41380
Os.57073.1.S1_at--273--7551Chr06:24807481..24807505 (25 bp)
GTGGCGCTGAATGTTTTAAGGTCTT
LOC_Os06g41380
Os.57073.1.S1_at--861--8531Chr06:24807534..24807558 (25 bp)
TGGACGACGCTATTTTACAGATAAA
LOC_Os06g41380
Target Sequence 
AATGAAGGCCCTGAGACCGAGACGCCTGCAGCCCCTGCACACAGCACGGCGATCAGGAAGCTCTGCAGGAACCGAGGCCT
GGTCATGCACGACATGAAGGAGGAGGCGGCCACCATGGAGGAGAAGAGGTCGGCCATGGACGCGCAGGTGTCTCAGCTGG
CGTCGAAGCGCAGGCGCCTCTTCCAGGACGACGACGATGACGACGGCGACTTGGAGTAGAGGGCAGTGGCCATGGTGGTA
GTGGTAGTGGTAGGAGGGGGGGGGGCGTGTAGAGGAGGAGGGAAAGCCTTTTATGTAGGTAGAGAAGCCAATCAGCTTAG
CTTAGCATTGGGGTGTCTTGTTAGGAAATGATGAAACGGCTTAGCGGCATTGCACGGCCCGTGTCAGTTTTTGGATCGTT
GGGCGTGTGGCGCTGAATGTTTTAAGGTCTTTTGGTTATTTAGGCCAGTGTGTATGAACTGGACGACGCTATTTTACAGA
TAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57073.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis