Browse Element(s) Details


Os.5942.1.S1_at

Description gb:CB645152
DB_XREF= gi:29640143
DB_XREF=OSJNEb06K21.r
CLONE=OSJNEb06K21
TID=Os.5942.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.5942 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_566017.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4139011/11Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41360Os.28418.1.S1_a_at11/116+24788479..24792568Ribose-phosphate pyrophosphokinase 2, putative, expressed
LOC_Os06g41370NANA6+24795550..24798356hypothetical protein
LOC_Os06g41380Os.57073.1.S1_at11/116+24804549..24807592expressed protein
LOC_Os06g41390Os.5942.1.S1_at11/116+24807830..24816725Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os06g41390Os.49688.1.S1_at9/116+24807830..24816725Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os06g41410Os.35458.1.S1_at11/116+24818856..24829136expressed protein
LOC_Os06g41410OsAffx.15876.1.A1_at9/116+24818856..24829136expressed protein
LOC_Os06g41410Os.36709.1.S1_x_at3/116+24818856..24829136expressed protein
LOC_Os06g41410Os.8753.4.S1_x_at1/116+24818856..24829136expressed protein
LOC_Os06g41410Os.6763.1.S1_x_at1/116+24818856..24829136expressed protein
LOC_Os06g41410OsAffx.5273.1.S1_at1/116+24818856..24829136expressed protein
LOC_Os06g41440Os.5275.1.S1_at10/116+24830707..24838945legume lectins beta domain PF|00139 containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008418molecular_functionprotein N-terminal asparagine amidohydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5942.1.S1_at--548--4971Chr06:24813679..24813703 (25 bp)
GCATCATCACTTAACCAGCTATCGG
LOC_Os06g41390
Os.5942.1.S1_at--1081--5551Chr06:24813438..24813462 (25 bp)
GAAATACAAGCCTCGGGTCTTCCAT
LOC_Os06g41390
Os.5942.1.S1_at--903--5311Chr06:24813400..24813424 (25 bp)
GAAGGTGGTCACGTTACTCAATAGT
LOC_Os06g41390
Os.5942.1.S1_at--782--7311Chr06:24813357..24813381 (25 bp)
GTGCTCTCTCTACATGCGGAACAAG
LOC_Os06g41390
Os.5942.1.S1_at--805--451Chr06:24813311..24813335 (25 bp)
ATCTCTCCTTTGTTAGAACCTGTGA
LOC_Os06g41390
Os.5942.1.S1_at--437--8271Chr06:24813245..24813269 (25 bp)
GGCATCAATCCCAGTCGATTCTAGA
LOC_Os06g41390
Os.5942.1.S1_at--942--4031Chr06:24813230..24813254 (25 bp)
CGATTCTAGATTTCTTTCTCCTGTG
LOC_Os06g41390
Os.5942.1.S1_at--985--6051Chr06:24813206..24813230 (25 bp)
GAGTTGTCCCATGTAATCATCCTTG
LOC_Os06g41390
Os.5942.1.S1_at--109--171Chr06:24813166..24813190 (25 bp)
ATTATTCAGATTTTCCCCGTAGACG
LOC_Os06g41390
Os.5942.1.S1_at--773--831Chr06:24813076..24813100 (25 bp)
ATGGATGATGGCATTCCGTTCTCGT
LOC_Os06g41390
Os.5942.1.S1_at--513--251Chr06:24813048..24813072 (25 bp)
ATATGCTCCGACCATTGTTACTTGG
LOC_Os06g41390
Target Sequence 
GCATCATCACTTAACCAGCTATCGGACTCTGAGGTCNTGTTGCAGTGCTCCACCTCTCCAGCTGCCGAGCCACCACATTT
TGTGGAAAATGAGAGAAGGATATGGAGATACTTGATTGAAAATCCATATTGGCAAGACACATTTCCGAAATACAAGCCTC
GGGTCTTCCATAGGACCAGTGATGGAAGGTGGTCACGTTACTCAATAGTATCATCCAGCTAACATTGGTGCTCTCTCTAC
ATGCGGAACAAGGGGATATATACTTCATATATAATCTCTCCTTTGTTAGAACCTGTGATAGATTGTGGTGTGGCAACACA
GGATTTCTTNTGAACAGCGGGCATCAATCCCAGTCGATTCTAGATTTCTTTCTCCTGTGAGTTGTCCCATGTAATCATCC
TTGGAAGGTGAATGAGGAATTATTCAGATTTTCCCCGTAGACGCACAGAAGTCTCAAGTTGATGTATTAGCACAGAACCT
GTGTTAGGATTGTTGATTGATAGGCAACATGGATGATGGCATTCCGTTCTCGTCTCATATGCTCCGACCATTGTTACTTG
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5942.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis