Browse Element(s) Details


Os.28454.1.S1_at

Description gb:CA763925
DB_XREF= gi:27545725
DB_XREF=AF53-Rpf_01C_F01_T7.ab1
CLONE=C0000121
TID=Os.28454.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.28454 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative disease resistance protein homolog (OSJNBa0077M12.17), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3265010/11cation efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32610OsAffx.29477.1.S1_x_at11/118+20062870..20064679U-box domain containing protein, expressed
LOC_Os08g32620Os.36050.1.S1_at10/118+20071789..20074935BAH domain containing protein, expressed
LOC_Os08g32630Os.38228.1.A1_x_at11/118+20076018..20085987expressed protein
LOC_Os08g32630Os.17822.2.S1_s_at11/118+20076018..20085987expressed protein
LOC_Os08g32630Os.38228.1.A1_s_at10/118+20076018..20085987expressed protein
LOC_Os08g32630Os.38228.2.A1_x_at4/118+20076018..20085987expressed protein
LOC_Os08g32630Os.38228.2.A1_at2/118+20076018..20085987expressed protein
LOC_Os08g32630Os.35897.1.A1_at1/118+20076018..20085987expressed protein
LOC_Os08g32650Os.28454.1.S1_at10/118+20086397..20088991cation efflux family protein, expressed
LOC_Os08g32660Os.8871.1.S1_at10/118+20090882..20093757expressed protein
LOC_Os08g32680OsAffx.17299.1.S1_at11/118+20108604..20114449hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0006829biological_processzinc ion transport
GO:0006882biological_processzinc ion homeostasis
GO:0010038biological_processresponse to metal ion
GO:0005774cellular_componentvacuolar membrane
GO:0016020cellular_componentmembrane
GO:0005385molecular_functionzinc ion transporter activity
GO:0008324molecular_functioncation transporter activity
GO:0015103molecular_functioninorganic anion transporter activity
GO:0015562molecular_functionefflux permease activity
GO:0046873molecular_functionmetal ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28454.1.S1_at--157--7751Chr08:20086948..20086972 (25 bp)
GGTGTTGTGATATCAACCTTACTAA
LOC_Os08g32650
Os.28454.1.S1_at--226--8011Chr08:20086912..20086936 (25 bp)
GGATGGCTTATAGCAGATCCCATAT
LOC_Os08g32650
Os.28454.1.S1_at--1126--6371Chr08:20086897..20086921 (25 bp)
GATCCCATATGCTCAGTATTTATTT
LOC_Os08g32650
Os.28454.1.S1_at--287--4211Chr08:20086846..20086870 (25 bp)
CCCCTGTTGAGGAATTCTGCTGAAA
LOC_Os08g32650
Os.28454.1.S1_at--1041--2331Chr08:20086812..20086836 (25 bp)
AAAGAGTTCCAAGGAGCCTCGAGAA
LOC_Os08g32650
Os.28454.1.S1_at--30--10491Chr08:20086752..20086776 (25 bp)
TTAAGGGTGTCATTGGAGTCCATAA
LOC_Os08g32650
Os.28454.1.S1_at--481--6931Chr08:20086693..20086717 (25 bp)
GTAGGCACTTTTCACCTTCATATCA
LOC_Os08g32650
Os.28454.1.S1_at--90--6511Chr08:20086627..20086651 (25 bp)
GATATATTTCATGAGGCTGGGATTC
LOC_Os08g32650
Os.28454.1.S1_at--73--8351Chr08:20086613..20086637 (25 bp)
GGCTGGGATTCAAGATCTGACTATC
LOC_Os08g32650
Os.28454.1.S1_at--926--2031Chr08:20086594..20086618 (25 bp)
ACTATCCAGATCGAATGTGTCAAGA
LOC_Os08g32650
Os.28454.1.S1_at--280--7451NONE
GTGTCAACGCAGGAGCCCATTTTTT
NONE
Target Sequence 
GGTGTTGTGATATCAACCTTACTAATCAAGTACAAGGGATGGCTTATAGCAGATCCCATATGCTCAGTATTTATTTCAAT
AATGATTGTTTCTTCTGTCCTTCCCCTGTTGAGGAATTCTGCTGAAATTTTGTTGCAAAGAGTTCCAAGGAGCCTCGAGA
AGGACATAAAGGAAGCTTTGGATGATGTTATGAAGATTAAGGGTGTCATTGGAGTCCATAATTTTCATGTCTGGAACTTA
ACAAATACAGATATTGTAGGCACTTTTCACCTTCATATCACAACAGAAGCTGACNAAGTCTTCTATAAGAGAAAAAGCTT
CAGATATATTTCATGAGGCTGGGATTCAAGATCTGACTATCCAGATCGAATGTGTCAAGAGATAGCATCCACTTGNTGAT
AAATGNGATAGAGNTTGGCATAGAGAACATGNTTATGGGTTTTAGGATTTGGCATANGTAAAANATANTTATGGGCTTCC
TGGTGTCAACGCAGGAGCCCATTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28454.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis