Browse Element(s) Details


Os.28514.1.S1_at

Description gb:AK111442.1
DB_XREF= gi:32996651
TID=Os.28514.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28514 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative calmodulin-binding protein (OSJNBa0083M16.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-183-A08, full insert sequence.
FL= gb:AK111442.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0428011/11calmodulin-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04250Os.50878.1.S1_at11/111+1873715..1876705expressed protein
LOC_Os01g04250Os.45422.1.S1_x_at8/111+1873715..1876705expressed protein
LOC_Os01g04260Os.10829.1.S1_at11/111+1885327..1889100Delta-7-sterol-C5, putative, expressed
LOC_Os01g04260Os.10829.2.S1_x_at11/111+1885327..1889100Delta-7-sterol-C5, putative, expressed
LOC_Os01g04270OsAffx.1928.1.S1_s_at11/111+1893879..1894118hypothetical protein
LOC_Os01g04270OsAffx.1928.1.S1_at11/111+1893879..1894118hypothetical protein
LOC_Os01g04280Os.28514.1.S1_at11/111+1899538..1902042calmodulin-binding protein, putative, expressed
LOC_Os01g04290Os.36438.1.S1_at5/111+1903780..1906469endo-1,4-beta-xylanase, putative
LOC_Os01g04290OsAffx.14829.2.S1_x_at1/111+1903780..1906469endo-1,4-beta-xylanase, putative
LOC_Os01g04300Os.6014.2.S1_at11/111+1909419..1911877endo-1,4-beta-xylanase, putative, expressed
LOC_Os01g04300Os.6014.2.S1_x_at11/111+1909419..1911877endo-1,4-beta-xylanase, putative, expressed
LOC_Os01g04300OsAffx.14829.2.S1_x_at1/111+1909419..1911877endo-1,4-beta-xylanase, putative, expressed
LOC_Os01g04310NANA1+1916551..1917233transposon protein, putative, unclassified
LOC_Os01g04320OsAffx.10903.2.S1_at11/111+1922127..1923305transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28514.1.S1_at--1121--9791Chr01:1901527..1901551 (25 bp)
TAACTTTGCGCTTCAGTGGACTGGC
LOC_Os01g04280
Os.28514.1.S1_at--167--7531Chr01:1901542..1901566 (25 bp)
GTGGACTGGCCAAATGTACAACATT
LOC_Os01g04280
Os.28514.1.S1_at--131--2071Chr01:1901639..1901663 (25 bp)
ACATTGTCTTTTCAAGTTCGCGTCT
LOC_Os01g04280
Os.28514.1.S1_at--205--6711Chr01:1901654..1901678 (25 bp)
GTTCGCGTCTGTATAACTGTGTTCA
LOC_Os01g04280
Os.28514.1.S1_at--417--7171Chr01:1901730..1901754 (25 bp)
GTCTCGCAGAGAATGTGGCCAATTT
LOC_Os01g04280
Os.28514.1.S1_at--1068--3111Chr01:1901750..1901774 (25 bp)
AATTTGGCCAGCATCGGCGAGAGCA
LOC_Os01g04280
Os.28514.1.S1_at--275--10791Chr01:1901808..1901832 (25 bp)
TTGGTATCCTTTGTTGCAGTTTTTC
LOC_Os01g04280
Os.28514.1.S1_at--1091--5011Chr01:1901823..1901847 (25 bp)
GCAGTTTTTCTTCTTCGTGTTTAGT
LOC_Os01g04280
Os.28514.1.S1_at--402--2831Chr01:1901849..1901873 (25 bp)
AAGTAGTAGTGTTCTTCTCCCAAAG
LOC_Os01g04280
Os.28514.1.S1_at--725--3271Chr01:1901950..1901974 (25 bp)
CAAACCGGTCGTTCTGCGATGTTAA
LOC_Os01g04280
Os.28514.1.S1_at--178--7411Chr01:1901993..1902017 (25 bp)
GTGTCTGTAACATCAAGTCCCAGTA
LOC_Os01g04280
Target Sequence 
TAACTTTGCGCTTCAGTGGACTGGCCAAATGTACAACATTTCAGGCTAAGAACAGTCACTGATGAACAGTAACTAAGGCT
GGGGACTTTAAAAGGTTTCAGAAATAGGGTGTACATTGTCTTTTCAAGTTCGCGTCTGTATAACTGTGTTCAAGTGACAC
GAAGGTTATAGGGTAGGTGAACAACAGNCTTGAGCGGCCCTCACTGTCTCGCAGAGAATGTGGCCAATTTGGCCAGCATC
GGCGAGAGCAAGAAGAGGCGAGCAAGTTAATTCTTTGGTTTAATTGGTATCCTTTGTTGCAGTTTTTCTTCTTCGTGTTT
AGTCAAGTAGTAGTGTTCTTCTCCCAAAGGTTGCATTGTTAATGTTGGGGTGTCGCAACATGGAGAAGGAGAACATGTAT
GATGATAATGCAGAACCTGTAAGAGCAAACCGGTCGTTCTGCGATGTTAACATTTTGCTGAAGTTTTTGTGTCTGTAACA
TCAAGTCCCAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28514.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis