Browse Element(s) Details


Os.2854.1.S1_at

Description gb:AB110171.1
DB_XREF= gi:32352139
TID=Os.2854.1
CNT=59
FEA=FLmRNA
TIER=FL+Stack
STK=15
UG=Os.2854 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for hypothetical protein, complete cds, clone: 13YPB021
DEF=Oryza sativa (japonica cultivar-group) mRNA for hypothetical protein, complete cds, clone: 13YPB021.
FL= gb:AB110171.1 gb:AK120726.1 gb:AK062080.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4808010/11CHCH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48060Os.2858.1.S1_at11/113+27283376..27287077glutamine amidotransferase class-I family protein, expressed
LOC_Os03g48070OsAffx.25617.1.S1_at11/113+27289000..27289427hypothetical protein
LOC_Os03g48080Os.2854.1.S1_at10/113+27292460..27295884CHCH domain containing protein, expressed
LOC_Os03g48090Os.2852.1.S1_at10/113+27296422..27300389Vegetatible incompatibility protein HET-E-1, putative, expressed
LOC_Os03g48100Os.52277.1.S1_x_at11/113+27300802..27307338expressed protein
LOC_Os03g48100Os.52277.1.S1_at9/113+27300802..27307338expressed protein
LOC_Os03g48104Os.50749.1.A1_at10/113+27312221..27313439expressed protein
LOC_Os03g48110Os.9082.1.S1_at9/113+27314050..27318264expressed protein
LOC_Os03g48120OsAffx.29738.3.S1_at11/113+27319292..27320224BTB/POZ domain containing protein
LOC_Os03g48120OsAffx.29738.3.S1_x_at11/113+27319292..27320224BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2854.1.S1_at--1081--10851NONE
TTGGTTCCACTATTGCTCAAGGCAT
NONE
Os.2854.1.S1_at--535--2931Chr03:27293381..27293404 (24 bp)
AAGGCATGGCTTTTGGTACTGGTAG
LOC_Os03g48080
Os.2854.1.S1_at--547--6651Chr03:27293337..27293361 (25 bp)
GTTGATGCTGTAATGGGTCCCCGTA
LOC_Os03g48080
Os.2854.1.S1_at--985--691Chr03:27293303..27293327 (25 bp)
ATGAGACTGTTGTCTCCGAGGCTGC
LOC_Os03g48080
Os.2854.1.S1_at--366--3411Chr03:27292808..27292832 (25 bp)
CAGCAAGTGCCAATTCTACCTGGAT
LOC_Os03g48080
Os.2854.1.S1_at--1100--6491Chr03:27292786..27292810 (25 bp)
GATATGCTGAACGAGTGCCGCCGTG
LOC_Os03g48080
Os.2854.1.S1_at--929--5471Chr03:27292729..27292753 (25 bp)
GAACTTTTATTAATTGGGCCTCGCG
LOC_Os03g48080
Os.2854.1.S1_at--338--4471Chr03:27292712..27292736 (25 bp)
GCCTCGCGTTACTCTCATGATTATA
LOC_Os03g48080
Os.2854.1.S1_at--683--3331Chr03:27292653..27292677 (25 bp)
CACTGCTTATGGCTGTACTCTGATA
LOC_Os03g48080
Os.2854.1.S1_at--815--4931Chr03:27292617..27292641 (25 bp)
GCTTGGGTTTGTGGTATGCTACTTC
LOC_Os03g48080
Os.2854.1.S1_at--427--1431Chr03:27292558..27292582 (25 bp)
AGAACTGCCTACATTGCTCTGGGTG
LOC_Os03g48080
Target Sequence 
TTGGTTCCACTATTGCTCAAGGCATGGCTTTTGGTACTGGTAGTGCCATGGCACATAGGGCTGTTGATGCTGTAATGGGT
CCCCGTACCATTCAGCATGAGACTGTTGTCTCCGAGGCTGCTGCCTCTGCCACCCCAATGGCCAACGCCACTCCATCTGA
CTCATGCAGCATCCATTCCAAGGCCTTCCAAGACTGCATCAACAACTATGGAAGTGACATCAGCAAGTGCCAATTCTACC
TGGATATGCTGAACGAGTGCCGCCGTGGTGGTGCATCTGCTTAGGCTGGTGGCCTTTTGGAACTTTTATTAATTGGGCCT
CGCGTTACTCTCATGATTATACATGAATAACTTGGCAAATTCATGAACTTGGTGCCACTGCTTATGGCTGTACTCTGATA
ATCGTTGGTACGCTTGGGTTTGTGGTATGCTACTTCTGGGAGTAGGTACATTCTACTATCCTAAAATGCTAGAACTGCCT
ACATTGCTCTGGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2854.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis