Browse Element(s) Details


Os.28964.1.S1_at

Description gb:AK110832.1
DB_XREF= gi:32996041
TID=Os.28964.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28964 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cysteine proteinase (P0410E01.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-A05, full insert sequence.
FL= gb:AK110832.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4279011/11Papain family cysteine protease containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42750OsAffx.11446.1.S1_at10/111+24655231..24657138hypothetical protein
LOC_Os01g42750OsAffx.787.1.S1_at2/111+24655231..24657138hypothetical protein
LOC_Os01g42760OsAffx.9134.1.S1_s_at11/111+24661228..24663006expressed protein
LOC_Os01g42770Os.37805.1.S1_at11/111+24668079..24670487expressed protein
LOC_Os01g42770Os.50844.1.S1_at11/111+24668079..24670487expressed protein
LOC_Os01g42780NANA1+24670366..24672020Papain family cysteine protease containing protein, expressed
LOC_Os01g42790Os.28964.1.S1_at11/111+24678156..24680193Papain family cysteine protease containing protein, expressed
LOC_Os01g42800Os.49871.2.S1_at11/111+24681000..24687285Uncharacterised protein family protein, expressed
LOC_Os01g42800Os.49871.1.S1_x_at11/111+24681000..24687285Uncharacterised protein family protein, expressed
LOC_Os01g42800Os.53404.1.S1_at11/111+24681000..24687285Uncharacterised protein family protein, expressed
LOC_Os01g42810Os.32223.1.S1_at11/111+24690994..24694526expressed protein
LOC_Os01g42820Os.41273.1.S1_at11/111+24695572..24699004RNA recognition motif family protein, expressed
LOC_Os01g42820Os.17617.1.S1_at6/111+24695572..24699004RNA recognition motif family protein, expressed
LOC_Os01g42830Os.5871.1.S1_s_at11/111+24702725..24706750Adaptin ear-binding coat-associated protein 1, putative, expressed
LOC_Os01g42830Os.5871.2.S1_at9/111+24702725..24706750Adaptin ear-binding coat-associated protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009414biological_processresponse to water deprivation
GO:0008233molecular_functionpeptidase activity
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28964.1.S1_at--46--9051Chr01:24678671..24678695 (25 bp)
TGCAGAAGGTGACGCCGCACGACAA
LOC_Os01g42790
Os.28964.1.S1_at--187--851Chr01:24678600..24678624 (25 bp)
ATGGACTCGAGCGACCCAGAGTTCA
LOC_Os01g42790
Os.28964.1.S1_at--78--131Chr01:24678571..24678595 (25 bp)
ATTCAAGGGAGGACGCGTGTACCGC
LOC_Os01g42790
Os.28964.1.S1_at--862--1931Chr01:24678479..24678503 (25 bp)
ACGGCACGCCGTACTGGCTGCTCAA
LOC_Os01g42790
Os.28964.1.S1_at--1058--2011Chr01:24678352..24678376 (25 bp)
ACTAAGGATACCGTGCGTCGATCGC
LOC_Os01g42790
Os.28964.1.S1_at--1109--6751Chr01:24678297..24678321 (25 bp)
GTTACCGTAATTTCGTCCATTATAT
LOC_Os01g42790
Os.28964.1.S1_at--37--9331Chr01:24678272..24678296 (25 bp)
TCGTATACATGCTTGAAATTCGGAA
LOC_Os01g42790
Os.28964.1.S1_at--966--6871Chr01:24678233..24678257 (25 bp)
GTATATCGTAGAGTCAATAACCCAT
LOC_Os01g42790
Os.28964.1.S1_at--191--351Chr01:24678217..24678241 (25 bp)
ATAACCCATTTGTACTAAGCAAGTG
LOC_Os01g42790
Os.28964.1.S1_at--414--6891Chr01:24678189..24678213 (25 bp)
GTATATGCATGCGTTGTATCCTTCT
LOC_Os01g42790
Os.28964.1.S1_at--513--611Chr01:24678181..24678205 (25 bp)
ATGCGTTGTATCCTTCTTTTTTCCT
LOC_Os01g42790
Target Sequence 
TGCAGAAGGTGACGCCGCACGACAAGGACGCGCTGCGCGCCGCCGTGGAGAGGCAGCCCGTGGCGGCGGACATGGACTCG
AGCGACCCAGAGTTCAGGGGATTCAAGGGAGGACGCGTGTACCGCGGCAGCGCTGGCTGCGGGAAGAAGCGGAACCACGC
GGTGGCGGTGGTCGGGTACGGGACGGCGAGCGACGGCACGCCGTACTGGCTGCTCAAGAACTCGTGGGCCACCGACTGGG
GGGAGAACGGCTACATGCGCATCGCCGTCGACGCCGACTGCGGCGTCTCCAGCCGCCCCGCCTACCCCTTCGTCTAATAA
CTAAGGATACCGTGCGTCGATCGCTGTCGCGTTTCCTTCCTCGTTTCGTACTAAGTTACCGTAATTTCGTCCATTATATT
CGTATACATGCTTGAAATTCGGAAGCATGTATATAAGAGTATATCGTAGAGTCAATAACCCATTTGTACTAAGCAAGTGT
ATGTATATGCATGCGTTGTATCCTTCTTTTTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28964.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis