Browse Element(s) Details


Os.28979.1.S1_at

Description gb:AK110814.1
DB_XREF= gi:32996023
TID=Os.28979.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28979 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0504E02.28 (P0504E02.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-F08, full insert sequence.
FL= gb:AK110814.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7125011/11expressed protein
LOC_Os04g476401/11RWP-RK domain containing protein, expressed
LOC_Os06g064801/11Core histone H2A/H2B/H3/H4 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71220Os.53646.1.S1_at10/111+41530698..41535561hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os01g71230Os.12071.1.S1_at11/111+41541160..41543918Nascent polypeptide-associated complex alpha subunit-like protein 3, putative, expressed
LOC_Os01g71240Os.34808.1.S1_at11/111+41546886..41554183Calcium-transporting ATPase 11, plasma membrane-type, putative, expressed
LOC_Os01g71250Os.28979.2.S1_x_at11/111+41554233..41556655expressed protein
LOC_Os01g71250Os.28979.1.S1_at11/111+41554233..41556655expressed protein
LOC_Os01g71256Os.33291.1.S1_a_at10/111+41557703..41562435expressed protein
LOC_Os01g71262Os.55362.1.S1_at11/111+41563261..41565644expressed protein
LOC_Os01g71270Os.48006.1.S1_at11/111+41569316..41570686Eukaryotic peptide chain release factor subunit 1-2, putative, expressed
LOC_Os01g71270Os.12402.2.S1_x_at1/111+41569316..41570686Eukaryotic peptide chain release factor subunit 1-2, putative, expressed
LOC_Os01g71280Os.11390.1.S1_at10/111+41572437..41576747Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g71300Os.57405.1.S1_at11/111+41578082..41599153Esterase D, putative, expressed
LOC_Os01g71300Os.57001.1.S1_at11/111+41578082..41599153Esterase D, putative, expressed
LOC_Os01g71300Os.50480.1.S1_at11/111+41578082..41599153Esterase D, putative, expressed
LOC_Os01g71300Os.18519.1.S1_at10/111+41578082..41599153Esterase D, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28979.1.S1_at--1055--10371Chr01:41555175..41555199 (25 bp)
TTTTACAGGGAGACAACACCTTCGT
LOC_Os01g71250
Os.28979.1.S1_at--143--5991Chr01:41555166..41555190 (25 bp)
GAGACAACACCTTCGTGGCGTGTTA
LOC_Os01g71250
Os.28979.1.S1_at--525--3371Chr01:41555159..41555183 (25 bp)
CACCTTCGTGGCGTGTTAAGCGAAA
LOC_Os01g71250
Os.28979.1.S1_at--851--1611Chr01:41555145..41555165 (21 bp)
AGCGAAATTGCCGAGTTGGTGGCTA
LOC_Os01g71250
Os.28979.1.S1_at--660--9171Chr01:41555033..41555157 (25 bp)
TGCCGAGTTGGTGGCTAAAAGACTT
LOC_Os01g71250
Os.28979.1.S1_at--78--30719Chr12:23934873..23934893 (21 bp)
AATCTTAACCATTCATTCTCCCTCA
NONE
Os.28979.1.S1_at--158--9211Chr01:41554357..41554381 (25 bp)
TCCAAACACACCCTCAATTCATGAA
LOC_Os01g71250
Os.28979.1.S1_at--307--691Chr01:41554331..41554355 (25 bp)
ATGAGGAGAAGTCGGCTTGAACATC
LOC_Os01g71250
Os.28979.1.S1_at--304--2851Chr01:41554323..41554347 (25 bp)
AAGTCGGCTTGAACATCGTGAAGAT
LOC_Os01g71250
Os.28979.1.S1_at--489--211Chr01:41554293..41554317 (25 bp)
ATTTGTAATCTCTTTGGTGAAGATG
LOC_Os01g71250
Os.28979.1.S1_at--545--6411Chr01:41554239..41554263 (25 bp)
GATATAACACGTCAGCAAGAATTTG
LOC_Os01g71250
Target Sequence 
TTTTACAGGGAGACAACACCTTCGTGGCGTGTTAAGCGAAATTGCCGAGTTGGTGGCTAAAAGACTTGCAATACGGAGTT
TGGAACACAAATCCTTTGTGGCGTGTAAAGCGAAATTGCCGAGATGGAGCCTGAAGGACTATTGTGGAGTTAAAGTATAC
GATCCTATTTTGTCGCTGTCAAAAACCCCAAAACCCTCAACTATATATCTGAACTTTCTGAATCCATTTCGGGATTACGC
TACGATGGAGAAATCTTTAAATTGGAGCTCAGGCAGTGTTTGGCAAATATCTAAGGGAAATGATTTCCCACCCCTCTTTA
AATCTTAACCATTCATTCTCCCTCATCCATTTAATCCTAACCCTTCATTCAATTCCTAATCCCAATCCCACCTCTCATTC
CCCATTATCCAAACACACCCTCAATTCATGAATATGAGGAGAAGTCGGCTTGAACATCGTGAAGATGGAGAATTTGTAAT
CTCTTTGGTGAAGATGGAGAATGTGTAATTTCTTATCTAAGAGATGATATAACACGTCAGCAAGAATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28979.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis