Browse Element(s) Details


Os.2901.1.S1_at

Description gb:AK071136.1
DB_XREF= gi:32981159
TID=Os.2901.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.2901 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023078E19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078E19, full insert sequence.
FL= gb:AK071136.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5503011/11Glucosyl transferase, putative, expressed
LOC_Os03g550103/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g54990NANA3+31208076..31208663retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55000NANA3+31215407..31215985hypothetical protein
LOC_Os03g55010Os.2901.1.S1_at3/113+31220943..31223588UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os03g55014NANA3+31227836..31228042hypothetical protein
LOC_Os03g55020OsAffx.3610.1.S1_at11/113+31231017..31232503Glucosyl transferase, putative, expressed
LOC_Os03g55030Os.2901.1.S1_at11/113+31233448..31236107Glucosyl transferase, putative, expressed
LOC_Os03g55034NANA3+31236193..31236883expressed protein
LOC_Os03g55040Os.2900.1.S1_at11/113+31237815..31239950UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os03g55050Os.54157.1.S1_at11/113+31241657..31244176Glucosyl transferase, putative, expressed
LOC_Os03g55050Os.54157.1.S2_at10/113+31241657..31244176Glucosyl transferase, putative, expressed
LOC_Os03g55070Os.5016.1.S1_at11/113+31254754..31257340UDP-glucose 6-dehydrogenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2901.1.S1_at--1128--1052Chr03:31223418..31223442 (25 bp)
AGGGTGGCTCGTCGCACAAGAATTT
LOC_Os03g55010
Os.2901.1.S1_at--685--8152Chr03:31223445..31223469 (25 bp)
GGAAATTTATTGACCTCCTAAGTGA
LOC_Os03g55010
Os.2901.1.S1_at--488--7392Chr03:31223466..31223490 (25 bp)
GTGAGTGACACTGCAACCGATCGAC
LOC_Os03g55010
Os.2901.1.S1_at--332--1791Chr03:31233646..31233670 (25 bp)
ACCGATCGACTGATATGCGTCCAAA
LOC_Os03g55030
Os.2901.1.S1_at--357--4611Chr03:31233630..31233654 (25 bp)
GCGTCCAAATTAATACTGTACTTCC
LOC_Os03g55030
Os.2901.1.S1_at--758--7011Chr03:31233613..31233637 (25 bp)
GTACTTCCTGTTTGTACAAGCAGAA
LOC_Os03g55030
Os.2901.1.S1_at--849--1431Chr03:31233592..31233616 (25 bp)
AGAACTCCATACTTACCTGCATTAC
LOC_Os03g55030
Os.2901.1.S1_at--606--9971Chr03:31233579..31233603 (25 bp)
TACCTGCATTACTGTATCCGCATTG
LOC_Os03g55030
Os.2901.1.S1_at--892--3691Chr03:31233514..31233538 (25 bp)
CTATCTTGTTACTTGCATGATCAAA
LOC_Os03g55030
Os.2901.1.S1_at--376--2291Chr03:31233487..31233511 (25 bp)
AAATGGCATGCCTTGAACCCTAAAT
LOC_Os03g55030
Os.2901.1.S1_at--129--10491Chr03:31233456..31233480 (25 bp)
TTAAGACCTTCTCTGGAGTTAAGCA
LOC_Os03g55030
Target Sequence 
AGGGTGGCTCGTCGCACAAGAATTTCAGGAAATTTATTGACCTCCTAAGTGAGTGACACTGCAACCGATCGACTGATATG
CGTCCAAATTAATACTGTACTTCCTGTTTGTACAAGCAGAACTCCATACTTACCTGCATTACTGTATCCGCATTGNTGCA
AAATCAAAACAATTTACCATATACTGTATTTATATCTATCTTGTTACTTGCATGATCAAACTAAATGGCATGCCTTGAAC
CCTAAATCCAAATTTAAGACCTTCTCTGGAGTTAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2901.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis