Browse Element(s) Details


Os.54157.1.S2_at

Description gb:AK110280.1
DB_XREF= gi:32995489
TID=Os.54157.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54157 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-163-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-163-E03, full insert sequence.
FL= gb:AK110280.1 gb:AK102229.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5505010/11Glucosyl transferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55010Os.2901.1.S1_at3/113+31220943..31223588UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os03g55014NANA3+31227836..31228042hypothetical protein
LOC_Os03g55020OsAffx.3610.1.S1_at11/113+31231017..31232503Glucosyl transferase, putative, expressed
LOC_Os03g55030Os.2901.1.S1_at11/113+31233448..31236107Glucosyl transferase, putative, expressed
LOC_Os03g55034NANA3+31236193..31236883expressed protein
LOC_Os03g55040Os.2900.1.S1_at11/113+31237815..31239950UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os03g55050Os.54157.1.S1_at11/113+31241657..31244176Glucosyl transferase, putative, expressed
LOC_Os03g55050Os.54157.1.S2_at10/113+31241657..31244176Glucosyl transferase, putative, expressed
LOC_Os03g55070Os.5016.1.S1_at11/113+31254754..31257340UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os03g55080Os.50645.1.S1_a_at11/113+31262144..31265875WRKY DNA binding domain containing protein, expressed
LOC_Os03g55080Os.49478.1.S1_at1/113+31262144..31265875WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54157.1.S2_at--44--5371Chr03:31243833..31243857 (25 bp)
GAAGAGTTCAGCAACGCAGCGGCAA
LOC_Os03g55050
Os.54157.1.S2_at--1095--1611Chr03:31243850..31243874 (25 bp)
AGCGGCAAGGCAAATCTGGAACTGA
LOC_Os03g55050
Os.54157.1.S2_at--1007--2551Chr03:31243869..31243893 (25 bp)
AACTGAACTTCTGTGCTTGTACGGC
LOC_Os03g55050
Os.54157.1.S2_at--50--10071Chr03:31243911..31243935 (25 bp)
TAGTCCTGTGCTGGTAGCTGGATTC
LOC_Os03g55050
Os.54157.1.S2_at--460--9971Chr03:31243925..31243949 (25 bp)
TAGCTGGATTCGTTTCCGTTTGGGA
LOC_Os03g55050
Os.54157.1.S2_at--90--2692Chr03:31243970..31243994 (25 bp)
AAGTTGGGCTTTCAAATTTCATTTG
LOC_Os03g55050
Os.54157.1.S2_at--1104--3291Chr03:31243982..31244006 (25 bp)
CAAATTTCATTTGTGTTCTTCGGAT
LOC_Os03g55050
Os.54157.1.S2_at--52--6151NONE
GAGGTTCGTTAACTTTACAGCGAGA
NONE
Os.54157.1.S2_at--491--9831Chr03:31244098..31244122 (25 bp)
TAAACTTCCACAAACCGTGCACTCA
LOC_Os03g55050
Os.54157.1.S2_at--240--2631Chr03:31244110..31244134 (25 bp)
AACCGTGCACTCAAGATGCTATGTT
LOC_Os03g55050
Os.54157.1.S2_at--671--6238Chr12:25777494..25777513 (20 bp)
GATGGTTTCACTGATGTGGCATCCT
NONE
Target Sequence 
GAAGAGTTCAGCAACGCAGCGGCAAGGCAAATCTGGAACTGAACTTCTGTGCTTGTACGGCCGGTCGCTCGCCTCCTGTA
GTCCTGTGCTGGTAGCTGGATTCGTTTCCGTTTGGGAAAGTTGGGCCGGGTAGATTTAAGTTGGGCTTTCAAATTTCATT
TGTGTTCTTCGGATAGTAAACGGAATAAATTCACCCGAGGTTCGTTAACTTTACAGCGAGATTTTTTGAGGTCCCTTAAC
CATAAAAACCATAAATGTGTACCCCTAAACTTCCACAAACCGTGCACTCAAGATGCTATGTTAGCATATATGGATGGTTT
CACTGATGTGGCATCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54157.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis