Browse Element(s) Details


OsAffx.3610.1.S1_at

Description tigr:9631.m05361
TID=OsAffx.3610.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative glucosyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5502011/11Glucosyl transferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g54990NANA3+31208076..31208663retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55000NANA3+31215407..31215985hypothetical protein
LOC_Os03g55010Os.2901.1.S1_at3/113+31220943..31223588UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os03g55014NANA3+31227836..31228042hypothetical protein
LOC_Os03g55020OsAffx.3610.1.S1_at11/113+31231017..31232503Glucosyl transferase, putative, expressed
LOC_Os03g55030Os.2901.1.S1_at11/113+31233448..31236107Glucosyl transferase, putative, expressed
LOC_Os03g55034NANA3+31236193..31236883expressed protein
LOC_Os03g55040Os.2900.1.S1_at11/113+31237815..31239950UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os03g55050Os.54157.1.S1_at11/113+31241657..31244176Glucosyl transferase, putative, expressed
LOC_Os03g55050Os.54157.1.S2_at10/113+31241657..31244176Glucosyl transferase, putative, expressed
LOC_Os03g55070Os.5016.1.S1_at11/113+31254754..31257340UDP-glucose 6-dehydrogenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3610.1.S1_at--627--4071Chr03:31231450..31231474 (25 bp)
CGAGCGAGCGGTGCCTCGACGGGCT
LOC_Os03g55020
OsAffx.3610.1.S1_at--777--5451Chr03:31231323..31231347 (25 bp)
GAACTCCGTCGTGGAAGGCGTCAGC
LOC_Os03g55020
OsAffx.3610.1.S1_at--583--9291Chr03:31231319..31231343 (25 bp)
TCCGTCGTGGAAGGCGTCAGCAACG
LOC_Os03g55020
OsAffx.3610.1.S1_at--328--2651Chr03:31231250..31231274 (25 bp)
AACCAGAGCTACATCTGCGACGTGT
LOC_Os03g55020
OsAffx.3610.1.S1_at--526--1371Chr03:31231246..31231270 (25 bp)
AGAGCTACATCTGCGACGTGTGGAG
LOC_Os03g55020
OsAffx.3610.1.S1_at--203--4851Chr03:31231243..31231267 (25 bp)
GCTACATCTGCGACGTGTGGAGGAC
LOC_Os03g55020
OsAffx.3610.1.S1_at--1144--1931Chr03:31231161..31231185 (25 bp)
ACGGCTCGTGGCGAGGCAACTGATA
LOC_Os03g55020
OsAffx.3610.1.S1_at--591--4051Chr03:31231150..31231174 (25 bp)
CGAGGCAACTGATACGGCGCAAGGT
LOC_Os03g55020
OsAffx.3610.1.S1_at--630--491Chr03:31231115..31231139 (25 bp)
ATCGGCGACCAGGAGACGAAGGCAA
LOC_Os03g55020
OsAffx.3610.1.S1_at--26--5311Chr03:31231098..31231122 (25 bp)
GAAGGCAAGGGCGATCGTGCTGCGG
LOC_Os03g55020
OsAffx.3610.1.S1_at--158--511Chr03:31231085..31231109 (25 bp)
ATCGTGCTGCGGGACGCTGCCAGTC
LOC_Os03g55020
Target Sequence 
CGAGCGAGCGGTGCCTCGACGGGCTCCGCCGCCGCGCCGCGCCGCGCGGCCGCGTCGTGGGCTGGTGCCCGCAGCGGCGC
GTGCTGGCGCACGCGTCCACGGCGTGCTTCGTCTCCCACTGCGGCTGGAACTCCGTCGTGGAAGGCGTCAGCAACGGCGT
GCCGTTCCTGTGCTGGCCGTACTTCGCCGACCAGTTCCTCAACCAGAGCTACATCTGCGACGTGTGGAGGACGGGGCTGA
GAATGGCCGCGCCGGCGCCGGCGACGGCGCCGGCCGACGAAGCGTCGGCACGGCTCGTGGCGAGGCAACTGATACGGCGC
AAGGTGGAGGAGCTGATCGGCGACCAGGAGACGAAGGCAAGGGCGATCGTGCTGCGGGACGCTGCCAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3610.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis