Browse Element(s) Details


Os.5016.1.S1_at

Description gb:AK098880.1
DB_XREF= gi:32984089
TID=Os.5016.1
CNT=43
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5016 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001F12, full insert sequence.
FL= gb:AK098880.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5507011/11UDP-glucose 6-dehydrogenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55020OsAffx.3610.1.S1_at11/113+31231017..31232503Glucosyl transferase, putative, expressed
LOC_Os03g55030Os.2901.1.S1_at11/113+31233448..31236107Glucosyl transferase, putative, expressed
LOC_Os03g55034NANA3+31236193..31236883expressed protein
LOC_Os03g55040Os.2900.1.S1_at11/113+31237815..31239950UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os03g55050Os.54157.1.S1_at11/113+31241657..31244176Glucosyl transferase, putative, expressed
LOC_Os03g55050Os.54157.1.S2_at10/113+31241657..31244176Glucosyl transferase, putative, expressed
LOC_Os03g55070Os.5016.1.S1_at11/113+31254754..31257340UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os03g55080Os.50645.1.S1_a_at11/113+31262144..31265875WRKY DNA binding domain containing protein, expressed
LOC_Os03g55080Os.49478.1.S1_at1/113+31262144..31265875WRKY DNA binding domain containing protein, expressed
LOC_Os03g55090Os.11216.1.S1_at3/113+31271345..31278112glycogen/starch/alpha-glucan phosphorylases family protein, expressed
LOC_Os03g55094NANA3+31282257..31282562hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0003979molecular_functionUDP-glucose 6-dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5016.1.S1_at--885--9711Chr03:31256758..31256782 (25 bp)
TCAAGACGCTCGACTACCAGAAGAT
LOC_Os03g55070
Os.5016.1.S1_at--802--4531Chr03:31256912..31256936 (25 bp)
GCCCGCCGTGGCATGATAAGATTCA
LOC_Os03g55070
Os.5016.1.S1_at--198--111Chr03:31256956..31256980 (25 bp)
ATTCGATTCTCAACCTCGATTCGAG
LOC_Os03g55070
Os.5016.1.S1_at--438--6251Chr03:31257016..31257040 (25 bp)
GATGGGTTGGCCACTTAAAATTCTT
LOC_Os03g55070
Os.5016.1.S1_at--1036--9011Chr03:31257060..31257084 (25 bp)
TGCAGGAGACGACACTACCATTTTC
LOC_Os03g55070
Os.5016.1.S1_at--338--5631Chr03:31257070..31257094 (25 bp)
GACACTACCATTTTCTCAGGCATAA
LOC_Os03g55070
Os.5016.1.S1_at--219--3551Chr03:31257123..31257147 (25 bp)
CATCGTCATCGCTGTTGAAGTTTTT
LOC_Os03g55070
Os.5016.1.S1_at--355--4031Chr03:31257156..31257180 (25 bp)
CGTTTGCACTGTTCTAGATCACTAT
LOC_Os03g55070
Os.5016.1.S1_at--530--3871Chr03:31257218..31257242 (25 bp)
CTGTCATCATGGCTCTTTCTGTTTG
LOC_Os03g55070
Os.5016.1.S1_at--404--3671Chr03:31257232..31257256 (25 bp)
CTTTCTGTTTGAGGGCCATCTGAAC
LOC_Os03g55070
Os.5016.1.S1_at--24--7891Chr03:31257300..31257324 (25 bp)
GGTTATTCCATTGTACTATTCTCAA
LOC_Os03g55070
Target Sequence 
TCAAGACGCTCGACTACCAGAAGATNCTACGACAACATGCAGAAGCCGGCGTTNNTNTTNGACGGCCGCAACGTNGTCGA
CCCGGAGAAGCTCAGGGAGATCGGCTTCATCGTNTACTCCATCGGCAAGCCGCTCGACGCCTGGCTCAAGGACATGCCCG
CCGTGGCATGATAAGATTCATGTGAATTTTAATCGATCGATTCGATTCTCAACCTCGATTCGAGCTGCAGGAATTCGACT
TGGAAGAAGAGCAATGCAAGATGGGTTGGCCACTTAAAATTCTTTATAGTTCGTTTTTTTTTTTTTTGCAGGAGACGACA
CTACCATTTTCTCAGGCATAAAAAAGTTGGGTGTTCTTGTTAGTAAAATCATCGTCATCGCTGTTGAAGTTTTTTTTTTC
ANTCGTTTGCACTGTTCTAGATCACTATAATCCCCACCCCACTCCCCCTCCCCCTCCCCCTCCCCCTGTCATCATGGCTC
TTTCTGTTTGAGGGCCATCTGAACGNAAATTTACCTGTATTATTCAGTCAACTTGTTATAGCAGATTGGTTATTCCATTG
TACTATTCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5016.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis